G4456


Basic Information

Item Value
gene id G4456
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17882588 ~ 17921005 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5998
TTTTCATACTGATAAAATACtgttaactatttttttctagatcttcaaactttaaaacgggtcaatttgacctgtaacataacaggagggttaaacgaTGCAGGCAGAAGGCGTGAAAGCGTattgttggcagggtgtaagatagcgatgagcatcacgacaacaaacacacacagaaaagacACGTGTTGTGATGATAATTGgcacatttctttattttgaaaacagacactgaaactttttttcacaattgaACTCCTTTTCAGATTCAAACTCGACATTGCACTCACGTGAACATAGGAAAGGCTgagtttttaatcattttttttctttttagttgtTGGTTTTtgactttttctcttttcatttttaacttcAGCGCAGGAATAATCTCCAATTTGATATCAAACCGTCATAACAACACCAAGGACATTGAAAAAAGAAGCCACACGTTTTGGTTACCGTGACTGCGAGAAGGTTCCCCACTCAGGAGGAATTCCCATGCAAGGAGTCGGATGGGTTCAAGCTATCCATGAAATGCTGGCCAAAACAATTGCATCAACATAGAAACACTGGGAGGGAATAATACTCCTCCCTGTTAAATATAGCAGTGCACTACTACTATGGTCAATGGaaaaggtgtgtgtttgtgtctctgaaagtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtgtgtttgtgatgaCACCCTTTATCCAGGGTGTTGAACAGTGTCTGATGTTGAAAGCTCCCTGTCTGCACCCGCCCGCCGAGGCGTAGCATCAGCACAGCCTCGCCGCGCTGCAGAGGAGATCAGGCATTGACCAGCAGAAGGCTGTGGTCGTGTCTGTCAGAGGCTATTAGCGTTCACTAGCACTCTCACAACTCACACTCGCCATCCTGCCCCAAGGACAACATGACAGTAGTATGTTGTGCTGATCAAGCGAAGTGTGTTAGATTCTCTAGCAGGTGACAAGACACTCCACTCGCCGACAATCCTTGACCGCCACATCGAAAGGTCACAGACGACAC
>TU6000
TTTTCATACTGATAAAATACtgttaactatttttttctagatcttcaaactttaaaacgggtcaatttgacctgtaacataacaggagggttaaacgaTGCAGGCAGAAGGCGTGAAAGCGTattgttggcagggtgtaagatagcgatgagcatcacgacaacaaacacacacagaaaagacACGTGTTGTGATGATAATTGgcacatttctttattttgaaaacagacactgaaactttttttcacaattgaACTCCTTTTCAGATTCAAACTCGACATTGCACTCACGTGAACATAGGAAAGGCTgagtttttaatcattttttttctttttagttgtTGGTTTTtgactttttctcttttcatttttaacttcAGCGCAGGAATAATCTCCAATTTGATATCAAACCGTCATAACAACACCAAGGACATTGAAAAAAGAAGCCACACGTTTTGGTTACCGTGACTGCGAGAAGGTTCCCCACTCAGGAGGAATTCCCATGCAAGGAGTCGGATGGGTTCAAGCTATCCATGAAATGCTGGCCAAAACAATTGCATCAACATAGAAACACTGGGAGGGAATAATACTCCTCCCTGTTAAATATAGCAGTGCACTACTACTATGGTCAATGGaaaaggtgtgtgtttgtgtctctgaaagtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtgtgtttgtgatgaCACCCTTTATCCAGGGTGTTGAACAGTGTCTGATGTTGAAAGCTCCCTGTCTGCACCCGCCCGCCGAGGCGTAGCATCAGCACAGCCTCGCCGCGCTGCAGAGGAGATCAGGCATTGACCAGCAGAAGGCTGTGGTCGTGTCTGTCAGAGGCTATTAGCGTTCACTAGCACTCTCACAACTCACACTCGCCATCCTGCCCCAAGGACAACATGACAGTAGTATGTTGTGCTGATCAAGCGAAGTGTGTTAGATTCTCTAGCAGGTGACAAGACACTCCACTCGCCGACAATCCTTGACCGCCACATCGAAAGGTCACAGACGACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5998 False 1058 lncRNA 0.44 2 17882588 17921005
TU6000 True 1060 lncRNA 0.44 2 17882588 17921005

Neighbor

gene id symbol gene type direction distance location
lsamp lsamp coding upstream 8772 17454350 ~ 17873816 (+)
LOC111192859 sae1,LOC107718284 coding upstream 1190829 16689234 ~ 16691759 (+)
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding upstream 1238768 16633323 ~ 16643820 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding upstream 1264658 16561486 ~ 16617930 (+)
LOC107197545 NA coding upstream 1340145 16538471 ~ 16542443 (+)
LOC111192370 NA coding downstream 96754 18017759 ~ 18022389 (+)
LOC103030597 LOC108412477 coding downstream 203689 18124694 ~ 18131953 (+)
sidt2 sidt2 coding downstream 217019 18138024 ~ 18166677 (+)
LOC103032687 gmfg,LOC103032687,LOC108277844,LOC107757325,LOC107679065,LOC107090391 coding downstream 329918 18250923 ~ 18256343 (+)
LOC103033229 psa6,LOC103033229,LOC106612618,LOC105026880,LOC106580837 coding downstream 353820 18274825 ~ 18281029 (+)
G4451 NA non-coding upstream 31145 17847764 ~ 17851443 (+)
G4420 NA non-coding upstream 368788 17449394 ~ 17513800 (+)
G4406 NA non-coding upstream 515337 17366847 ~ 17367251 (+)
G4401 NA non-coding upstream 534578 17347662 ~ 17348010 (+)
G4346 NA non-coding upstream 693342 17189032 ~ 17189246 (+)
G4460 NA non-coding downstream 8719 17929724 ~ 18009347 (+)
G4467 NA non-coding downstream 37507 17958512 ~ 17985189 (+)
G4531 NA non-coding downstream 113506 18034511 ~ 18038744 (+)
G4549 NA non-coding downstream 142429 18063434 ~ 18065761 (+)
G4563 NA non-coding downstream 256603 18177608 ~ 18178083 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 1259519 16619046 ~ 16623069 (+)
G4221 NA other upstream 1336734 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 2056485 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 2719632 15072840 ~ 15162956 (+)
G3790 NA other upstream 2843674 15038555 ~ 15038914 (+)
LOC103039709 NA other downstream 89173 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 120284 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 150959 18071964 ~ 18073663 (+)
G4612 NA other downstream 838370 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 1239726 19160731 ~ 19165631 (+)

Expression


Co-expression Network