RNA id: TU5998


Basic Information

Item Value
RNA id TU5998
length 1058
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G4456
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17882588 ~ 17921005 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTCATACTGATAAAATACtgttaactatttttttctagatcttcaaactttaaaacgggtcaatttgacctgtaacataacaggagggttaaacgaTGCAGGCAGAAGGCGTGAAAGCGTattgttggcagggtgtaagatagcgatgagcatcacgacaacaaacacacacagaaaagacACGTGTTGTGATGATAATTGgcacatttctttattttgaaaacagacactgaaactttttttcacaattgaACTCCTTTTCAGATTCAAACTCGACATTGCACTCACGTGAACATAGGAAAGGCTgagtttttaatcattttttttctttttagttgtTGGTTTTtgactttttctcttttcatttttaacttcAGCGCAGGAATAATCTCCAATTTGATATCAAACCGTCATAACAACACCAAGGACATTGAAAAAAGAAGCCACACGTTTTGGTTACCGTGACTGCGAGAAGGTTCCCCACTCAGGAGGAATTCCCATGCAAGGAGTCGGATGGGTTCAAGCTATCCATGAAATGCTGGCCAAAACAATTGCATCAACATAGAAACACTGGGAGGGAATAATACTCCTCCCTGTTAAATATAGCAGTGCACTACTACTATGGTCAATGGaaaaggtgtgtgtttgtgtctctgaaagtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtgtgtttgtgatgaCACCCTTTATCCAGGGTGTTGAACAGTGTCTGATGTTGAAAGCTCCCTGTCTGCACCCGCCCGCCGAGGCGTAGCATCAGCACAGCCTCGCCGCGCTGCAGAGGAGATCAGGCATTGACCAGCAGAAGGCTGTGGTCGTGTCTGTCAGAGGCTATTAGCGTTCACTAGCACTCTCACAACTCACACTCGCCATCCTGCCCCAAGGACAACATGACAGTAGTATGTTGTGCTGATCAAGCGAAGTGTGTTAGATTCTCTAGCAGGTGACAAGACACTCCACTCGCCGACAATCCTTGACCGCCACATCGAAAGGTCACAGACGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5992 lncRNA upstream 31145 17847764 ~ 17851443 (+) True G4451
TU5961 lncRNA upstream 368788 17449394 ~ 17513800 (+) True G4420
TU5947 lncRNA upstream 515337 17366847 ~ 17367251 (+) True G4406
TU5942 lncRNA upstream 534578 17347662 ~ 17348010 (+) True G4401
TU5877 lncRNA upstream 693342 17189032 ~ 17189246 (+) True G4346
TU6007 lncRNA downstream 8719 17929724 ~ 18009347 (+) True G4460
TU6015 lncRNA downstream 37507 17958512 ~ 17985189 (+) False G4467
TU6014 lncRNA downstream 62872 17983877 ~ 17985189 (+) True G4467
TU6069 lncRNA downstream 89290 18010295 ~ 18011849 (+) False LOC103039709
TU6085 lncRNA downstream 113506 18034511 ~ 18038744 (+) True G4531
XM_022669057.1 mRNA upstream 8772 17454350 ~ 17873816 (+) False lsamp
XM_022669050.1 mRNA upstream 8772 17454352 ~ 17873816 (+) True lsamp
XM_022671138.1 mRNA upstream 1190829 16689234 ~ 16691759 (+) True LOC111192859
XM_007245963.3 mRNA upstream 1238768 16633323 ~ 16643820 (+) True LOC103044410
XM_007245962.3 mRNA upstream 1238768 16633323 ~ 16643820 (+) False LOC103044410
XM_022671146.1 mRNA downstream 89173 18010178 ~ 18012103 (+) True LOC103039709
XM_022669104.1 mRNA downstream 96754 18017759 ~ 18022389 (+) True LOC111192370
XM_007233939.3 mRNA downstream 203689 18124694 ~ 18131953 (+) True LOC103030597
XM_022669160.1 mRNA downstream 217019 18138024 ~ 18166677 (+) False sidt2
XM_022669153.1 mRNA downstream 217020 18138025 ~ 18166677 (+) True sidt2
TU5717 other upstream 1259519 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 1259848 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 1336734 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 2720314 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 2836204 15046313 ~ 15046384 (+) True trnae-uuc_1
TU6119 other downstream 150959 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 480049 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 482700 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 838370 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 838370 18759375 ~ 18759858 (+) False G4612

Expression Profile