LOC107197545


Basic Information

Item Value
gene id LOC107197545
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16538471 ~ 16542443 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604962.2
AGTGAGCAGCGTCGCCCTCCCGACAACACCGTCCCACACAGAGGCCATTGTACAGCCTGCCACTGTTTATATGATACGAACACAGTCTTCTCTTCATAAATACGGGCTGAAAAATACACACGATGTCTCTTCTGGAGTCTCGAGTGTTTTCTATCTTGGAGGATCTTGTTGAGGCCACGGTACACAGCATGGCCAGAGCTGAGGATGAATCACTGCTGGATCAGTTTAAAGAGAGTCACTCTCTGAACGAGCCAGCAGGAATAAAGGCTCAGCTGAACACTGTCCTTGAAATGCACATAAAGGAAGCGGTGGAGAAGGTCTGCAGGCTCTTTAGTGACAATTCAGCAGTTTTACATCTGCCTTTAACTGAGAATCAGACTACACAGAATAACCTCAAGAGGAAACCAAAGCGGCTGGCGAAGAGGCATAAATCTGTGACTAGTAGAATGAGAGGATCTCCAGAGGAAATCATAGCTGTTGCGTCTCAGAGTTGGAGAGAAGAAAATAGTGGAGATCTTGACCAACCTGAGTCTCTTGTTGCTTCCCTCTCAACAGAAGAGCAGTCAAACATGAATGGTAGTGTGATGCtcattaaagaaaaagaaattccTGAACAGATCCAGGAGAATGCTATGGACGATGAAACATTGCAGACCAAGGATGAAGAACAAATGATAGAACTCATTAATCCAGGACTGGTTGATGTTTGTATTGTAACGGTAGGGACAGAAGTGAATGGAGTCACAGATTTACCCAACGTAAGAAAGGTAGGGTGCATAAAGAAACAGAGAGTCTGCTGTAAGATCTGCAAAAGAACCTTCAGCAAGCTGCTTCACCTCAAAGCTCACATGGCTCTCCATGCGGCTGTGAGCAGTCTACAGTGTAATAAGAGCTTCGTAAGGAAACGTGGATTAGATGCACATCAGACATTAAATGGTGGGGGGTCGTTGATTCATCAACAGCATGTAAGAAATTGTAAAAGGCCTAATAAAGCGAAAGGACACTCCAAAGGGAAAGCTTGCATAGAGTTTGGCAGTTCGTCTGGTTCTCTCCAAAAACGCTCAGGGAAAAAGTGGTACAGCTGTGAGACCTGTAAAAAAACTTTTGCCTGTCGTTCCAATCTCTACCGCCACCGGAGAATCCATACGGGAGAGAAGCCTTTTACCTGCCGCACCTGCGGGAAAAGTTTCAACCAGCGGAACTCGTTGAAGTCTCACGAGCGAATTCACACAGGTGAGAAACCTTACGTCTGCAAATCTTGCGGAAAAGGCTTCAGGGAGGCCGGTGGTCTGAGGCTGCATGACGGCCGGTTTGCGGGGAAAGAGGGCTTTAGCTGTGTGGTGTGCGGCTTGTGCTCAGCTTGTGTGACCGCACTGAACTCACATCACAACACTCACATGGCAGAGTTGCCCGTCTTATGTAGAATCTGTGGAGAAAGCATTGTTTCCCTCAGCAGTTTAAAGGCTCACCAGAAGCAACACGGTGCTAGCGGATCTTACACATGTGGAGTCTGCGATAAGGTCTTCCGAAGTTCaggaaatttaaaaattcacgAAAGGACtcacaccggagagaagccCTACAGCTGTGACGTGTGCGGCAGGACATTCTCCCAGCAGTACAGCCTCAAGTCCCACCAGCTCACCCACACTGGAGAAAGGCCTTTCAGCTGTGACGTGTGCAGTAAAGGTTTTTCCTCTGCAGGGAACTTGCGCAGACATCAGCGCATACACACCGGGCAAAAACCTTACAGCTGTAACGTCTGCGAGCTAAGTTTTAACCAGCATAACACTCTCAAAGCGCACATGTATGtgcacacaggagagaaacagtATACGTGTGACAaatgtgggaggagttttggttaTCAGAGAAGCCTAAAGAGTCATAACTGTGCATTTAATGAGTGAGTCTCTGTGGTATAGCATGTGGTATAGCAGTACagggtggaaaaaaaatacaggacacCCTGTATATTGGTAAGAATTTGGGGTTcaccaaaatgaacattttcatctgaaatgaaaacttaaaaaatacgtttttgttaattttgctACATGTTTCACCATTGCATATGTTAAATAATCGAATGGATTTTttgtaaagtgtgtttaaacATTCTCAAAAATCTGAGAGttactgcagttatctgatCATTTAAGTAGTTACATATACCATATTCCAAAcgtataaaattattattttttctttattttagcaTGAGGGTGATACTGCTGAGTAATGGAACTTGTAccaaacattaacaaaaaataaaatgttcactCTTGCTTCAAA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604962.2 True 2298 mRNA 0.44 4 16538471 16542443

Neighbor

gene id symbol gene type direction distance location
LOC103030966 NA coding upstream 1948 16531349 ~ 16536523 (+)
exoc3l2 exoc3l2,exoc3l2b,LOC107729130,LOC107597542 coding upstream 8229 16482196 ~ 16530242 (+)
LOC103047564 ppp1r14a,ppp1r14ab,LOC103047564,LOC108425826,LOC107729097,LOC107586311,LOC107597604,LOC107662758 coding upstream 61366 16454684 ~ 16477105 (+)
LOC103022964 LOC103022964 coding upstream 246351 16280969 ~ 16292120 (+)
LOC103022345 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 coding upstream 261638 16271162 ~ 16276833 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding downstream 19043 16561486 ~ 16617930 (+)
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding downstream 90880 16633323 ~ 16643820 (+)
LOC111192859 sae1,LOC107718284 coding downstream 146791 16689234 ~ 16691759 (+)
lsamp lsamp coding downstream 911907 17454350 ~ 17873816 (+)
LOC111192370 NA coding downstream 1475316 18017759 ~ 18022389 (+)
G4214 NA non-coding upstream 57819 16480335 ~ 16480652 (+)
LOC111192355 NA non-coding upstream 171782 16356282 ~ 16366689 (+)
LOC111192356 NA non-coding upstream 187920 16349607 ~ 16350551 (+)
G4167 NA non-coding upstream 223534 16314112 ~ 16314937 (+)
G4164 NA non-coding upstream 225802 16311941 ~ 16312669 (+)
G4277 NA non-coding downstream 136962 16679405 ~ 16681219 (+)
G4331 NA non-coding downstream 602478 17144921 ~ 17145205 (+)
G4334 NA non-coding downstream 612317 17154760 ~ 17155096 (+)
G4337 NA non-coding downstream 615201 17157644 ~ 17157851 (+)
G4346 NA non-coding downstream 646589 17189032 ~ 17189246 (+)
LOC103040601 NA other upstream 712368 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 1375515 15072840 ~ 15162956 (+)
G3790 NA other upstream 1499557 15038555 ~ 15038914 (+)
G3736 NA other upstream 1574888 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1692845 14840293 ~ 14845626 (+)
G4221 NA other downstream 499 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 76603 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 1467735 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 1498846 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 1529521 18071964 ~ 18073663 (+)

Expression


Co-expression Network