LOC103022964 (LOC103022964)


Basic Information

Item Value
gene id LOC103022964
gene name LOC103022964
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16280969 ~ 16292120 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245984.3
ccaattttttttattatggcaAATCTGTGTCTTAGACAGTGTATTTATATTCATGTGATCATATTTATGTGATGTAGCAGTTCAGATGTCTAGGAAATGTTACTTAGCATTATTTAGTGTTACATTTCCCCAATAGTTCCCaatagtttataaatatattacacatattagTGATATGAAAAAATATGCCACACAAGTTTTTTACAGGattctgacagaagcaaatgtctGTCTGCTGAGATTTACTctggcagcttctatatgtTAAGAGGTACAATGTCGATTATCCCATTTTATCCCatcaaatcacattaaaacagtgattccattcattaaaattaattagATTAGCCTCCCAGCCTTATGCCCATCCCTAGCACTACATCTAGTTAGCAAAAGAAGCAGAACATGGCGGATAAATGCAgtctaaaaattaaaaatgcctAAAGCAAAGATTCTATGTTATTGAAcatggcaaggtgatgtgaattatGGGACTTAAAGTCCTGTAGTTTATGTGGGGGAGAACCTTCAGACtctgtaaagtttttttgtaaattagaaGCTTAAATAGCAAATTGctgttattttttgtcttttttttagtttgacaCTAGGGCTGCtctgtacatactgtacatgcagTGTAAATACTTctgaataaagtaacttttttcacAGGGAAGCCTAGTTATTGTTATATAGTTTAGAACTTGTATATTCGTAGCACTGTCAGTTCATATCCAAAACTGCTTAAGTCATCTGCCTTACTTGTTACACATTAAtccaaaacacagcacagcttTACCACACAGTATGTGGTTCCCAAGGTCATATGAGCAAATGAATCTGGAGGCTGATTTGGTGGTAGTCTCAGAGAACTGACAAATCAGAATGTAGTTTACAGATAGAGGGTGGGACGGAGCAAATGACCCCCTCCTCAGGAGTGTATGTGCGTGCTCACATGTACGCAGTGCTAAACCTGGAGTGTGTGACAGCGACGTGACCTGCGTGAACTAGTTTTACATAGTGAatatataatgatttttttaacaaggaaaactTTCTAGGAACAGTCAATAAAAtatctgagaaagagagaagtcaATTATTCAAAGATATCTGATAACAACATATAtgAGGTTTTCTGATCTGGTGATGATGAAAGCAGTGTTTTGGATGTGGAACAGTGTTGGTCAGCTGTACTTTCACTCCCCGCCAATAAGAGTATCACTTCCCTGTTTCCTCAGTTAATGTTCAAAAATGGAACTTTCATTTGCTGGTTGGTTTGTTTCACTTCAGTTCTGCTTTGCAACAACGATTAGAAAAGGGAAGAGATTCTAGAAGAGATTTCTGATCTTTCGGGCAGACAGCACCACCATGGTTTACTGTAAATCATCATTCTTCTGGATTTGCTTCACTGCTGTACTGGCTGGATGGGTTCTCACCCAATGTCCTGAATCCCACTGGACCACTAGTAGTGAGACAAGCTCAAACCACTCTTGTAACTGGACGTGCATGATTTTTACTATACAGTGGCCAGGAAGCTTCTGTCTGAGCCTGGAAAATAGAAACATCTGTAGGATCCCCGAGAATATTCACAACTGGACCATCCACGGCCTGTGGCCGATACGTACTTAtggctgctgtttctgctggCCAGTATTCCAGTCTCATCTTCAGGATCTGGAGCCAGAACTCTCCCAGCTGTGGCCATCACTCATTAAATCCAAGAGCAACTTTTCCTTCTGGAAAGACGAGTGGTTTAAACACGGAACATGTGCAGCCTGTGTAGAGAGCATGGGCTCTCCAGCTCATTATTTCAGAACCTCACTCAAGCTTCGGACGCTCTTCGATGTTGACAATGCCCTGGCAAACACCGGCATCAAGCCCTCCTGTAACATCTCCTATAAGCACGAGGAAATTCATGCTGCGCTCGGGCCGTTCCTGGGAAACAACTATGTGGTACAGTGCGTCAAGGACGAGAAGGAGCGAGAAGTGTGGGTTCAGCTGAAGATCTACATCTCTAAGAACATCACTCTTGGATGCCAAAAAGAGGAAACACTCAAGTTTTCCAGAGCATCCAACACTTCTTTGGGACATCCCTGTCCAAAGAACACCACTATATTCTACTTCCCTTTAGACCGTGAGCATCCCAAACAACCCTGCCCCTGAAACTAGATTAGCTCCGGCTTCAGCTCTAAAAGAGTTTTCCAAGGAAGCGAAGATTAAGAATTTTGAGCTGCTCATCCAGCTCCATTCGGACGATGCCATCCTCTCCGTCGATACTGAGCAGGACACCTGTGGCCTCCCGGTCTTCTCCCAGAATCACCTTCACCTGAATAAAACACCGGCACAtcacagaataaataatattgtattttttattaggataatgattttaataaaatagcacaGTAGTGCAAAAATACCTTTTGAAAGagcaacaattaaaaaataaataaataacatgtcTTCACTGTCGTCACAGTCTGCTTAGTTCTGTCTGCTGTTAAATAAGTAAACTAACTTCCATATTAAATCTGGAAAGTGTGGAATgcaa

Function

NR:

description
ribonuclease Oy-like

GO:

id name namespace
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245984.3 True 2563 mRNA 0.40 12 16280969 16292120

Neighbor

gene id symbol gene type direction distance location
LOC103022345 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 coding upstream 4136 16271162 ~ 16276833 (+)
dll3 NA coding upstream 69464 16205897 ~ 16211505 (+)
timm50 timm50,LOC107586258,LOC107729126,LOC107728222,LOC107662791 coding upstream 88401 16159758 ~ 16192568 (+)
LOC103025893 tpst1,LOC108425813,LOC108277496,LOC107662793,LOC107657564 coding upstream 211840 16007665 ~ 16069129 (+)
LOC103027191 LOC108425812,LOC108277490 coding upstream 328286 15945728 ~ 15952683 (+)
LOC103047564 ppp1r14a,ppp1r14ab,LOC103047564,LOC108425826,LOC107729097,LOC107586311,LOC107597604,LOC107662758 coding downstream 162564 16454684 ~ 16477105 (+)
exoc3l2 exoc3l2,exoc3l2b,LOC107729130,LOC107597542 coding downstream 190076 16482196 ~ 16530242 (+)
LOC103030966 NA coding downstream 239229 16531349 ~ 16536523 (+)
LOC107197545 NA coding downstream 246351 16538471 ~ 16542443 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding downstream 269366 16561486 ~ 16617930 (+)
G4120 NA non-coding upstream 123436 16156512 ~ 16157533 (+)
G3917 NA non-coding upstream 392602 15886114 ~ 15888367 (+)
G3894 NA non-coding upstream 508465 15763244 ~ 15772504 (+)
LOC111192856 NA non-coding upstream 616621 15660210 ~ 15664348 (+)
LOC111192011 NA non-coding upstream 625648 15639346 ~ 15655321 (+)
G4158 supt5h,LOC107586261 non-coding downstream 1391 16293511 ~ 16310645 (+)
G4164 NA non-coding downstream 19821 16311941 ~ 16312669 (+)
G4167 NA non-coding downstream 21992 16314112 ~ 16314937 (+)
LOC111192356 NA non-coding downstream 57487 16349607 ~ 16350551 (+)
LOC111192355 NA non-coding downstream 64162 16356282 ~ 16366689 (+)
LOC103040601 NA other upstream 454866 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 1118013 15072840 ~ 15162956 (+)
G3790 NA other upstream 1242055 15038555 ~ 15038914 (+)
G3736 NA other upstream 1317386 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1435343 14840293 ~ 14845626 (+)
G4221 NA other downstream 250822 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 326926 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 1718058 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 1749169 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 1779844 18071964 ~ 18073663 (+)

Expression


Co-expression Network