G4120


Basic Information

Item Value
gene id G4120
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16156512 ~ 16157533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5583
GTATTAATCTCTCTTCTTCCTTTGAGGAGGTAATGACAGGGATAACACACAAAGCCTGTTGCTTATTatcctgtgattaaaaaaaaacaatcaaggACAAGCACACCATTACTGATTACAGAGAgaacagctttatttatttttttcagtttttgtaaCCTGTTTTTAAAACTACTCTGACCCAGTTAAGCTTCACTGACCTGAACGGCTTGCTGACACAAATCTATCAAACCCTGGATATGATAGTACTTGGCCTCTGCCAAAAGCTCCATGATCCCCTGCCTGCTCTTGGGCAAGGTCAGACTTCCATCCCTCAAGTAGCCGAGTATTGACCCGAAGTGCTTCCCACAGCGGTCGATCAAAATCCAACCTGAGGAGAACAAAATCCTTTCAGCCcacgaacaaaaaaaaaaCTTCTTTGTCCGTGAAAACCTCGGTCTTGCCACTGAACATGGACTTCAGCAGGCCGTCCTGTCGCGTCAGCACCTGCACAGTTGAGTAGTGCAGAACTCCTCCCACATTGAGTCGCACATATTTGTTTCCCACAGTGCCCTCCTGGCAACACGTCTTGGTCTTGGGGCAGGTCACTGCAGAGACTAACAAGGTGGGCGGAACCTGCGGAGGACGCTGGTGCAGGCAGCTCTCTCCCGACATATCCCTCTGGAGGTAGATGACCACCCTGCACACAGTGGGCTTGATGTCCCCCGCCGTGGTGAATGCTGGTGGGGAAGCTGTCAGGACAAGCTCTCGCCACACCTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5583 True 761 lncRNA 0.44 2 16156512 16157533

Neighbor

gene id symbol gene type direction distance location
LOC103025893 tpst1,LOC108425813,LOC108277496,LOC107662793,LOC107657564 coding upstream 87383 16007665 ~ 16069129 (+)
LOC103027191 LOC108425812,LOC108277490 coding upstream 203829 15945728 ~ 15952683 (+)
LOC103026903 aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491 coding upstream 216120 15934508 ~ 15940392 (+)
LOC103027482 NA coding upstream 263682 15890205 ~ 15892830 (+)
LOC111192347 NA coding upstream 381560 15731479 ~ 15774952 (+)
timm50 timm50,LOC107586258,LOC107729126,LOC107728222,LOC107662791 coding downstream 2225 16159758 ~ 16192568 (+)
dll3 NA coding downstream 48364 16205897 ~ 16211505 (+)
LOC103022345 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 coding downstream 113629 16271162 ~ 16276833 (+)
LOC103022964 LOC103022964 coding downstream 123436 16280969 ~ 16292120 (+)
LOC103047564 ppp1r14a,ppp1r14ab,LOC103047564,LOC108425826,LOC107729097,LOC107586311,LOC107597604,LOC107662758 coding downstream 297151 16454684 ~ 16477105 (+)
G3917 NA non-coding upstream 268145 15886114 ~ 15888367 (+)
G3894 NA non-coding upstream 384008 15763244 ~ 15772504 (+)
LOC111192856 NA non-coding upstream 492164 15660210 ~ 15664348 (+)
LOC111192011 NA non-coding upstream 501191 15639346 ~ 15655321 (+)
G3808 NA non-coding upstream 537341 15617118 ~ 15619171 (+)
G4158 supt5h,LOC107586261 non-coding downstream 135978 16293511 ~ 16310645 (+)
G4164 NA non-coding downstream 154408 16311941 ~ 16312669 (+)
G4167 NA non-coding downstream 156579 16314112 ~ 16314937 (+)
LOC111192356 NA non-coding downstream 192074 16349607 ~ 16350551 (+)
LOC111192355 NA non-coding downstream 198749 16356282 ~ 16366689 (+)
LOC103040601 NA other upstream 330409 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 993556 15072840 ~ 15162956 (+)
G3790 NA other upstream 1117598 15038555 ~ 15038914 (+)
G3736 NA other upstream 1192929 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1310886 14840293 ~ 14845626 (+)
G4221 NA other downstream 385409 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 461513 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 1852645 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 1883756 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 1914431 18071964 ~ 18073663 (+)

Expression


Co-expression Network