G3917


Basic Information

Item Value
gene id G3917
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15886114 ~ 15888367 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5297
ACAATACTGCCCTacaaagcaaaaaggcagtaaCTGCACAGAGCACCAAACTGAGAAAAATGACCTTAAAGTTATCTTGTTGTCCAGCCCAAGTAGTTGTAGGTAGATTATTGGACATGAGGCAGTATTGTTACTCCATATAACCTTATTCTTTGCAGATAtcagtaattttaatattttttttattttaccccttttttacagttactgtatttttgctttGTATTACTCCTACTTTCGAAAGTTCCATACCAAGTAAGAAGGCAGTAACTTAATATTCTTCAAAAACCTTTTTTGTCATAGCTAGGGTTTTGTTGTATTTGAGTTGTACTGATTGGAACCATTTGTATCCTGCAAGACAGTGTTGCCACAGCTAATGTAATTAAACCATTTAAGGTGTTAATAGTTcactcagatttttttctggtgtttatcacatctaaaaaaatataatatttccaAGCTGCATCAAGGGCCAAATGAGCAgcgttcatatttttatatggccCTATTATGGGAGTGTACTTAGTGTGTATTCTTAGTTAATTTATGTTCATTAATCTCAAACACATCTGAATTATCTGcaatacataataaacactAGTTTTAACCTGGATGCACTGAAATACAAGTTCATCGTCAAAGTTGTTTTTcaagttgatttaaaatgtcataGCCTACACAAACATACTTTTTCACGGAACCCCCTGTCACCTCAGACTCCGGACCTTGAGAACCTAATACACAAAAGTGATTAATGAAGTGAATACTcaggataattaaaaaaaaaaaatagatagaaaCAAGTAAATAAGCTTAtttgatattaatttaataaatagttacatATACAACTGTCAAAAAACAGGGGATAATGAAAgaacaacattttattaaaaagaaccTTCTGTACATTAATTCGGCCTATGACTAAAATATTGCTTTCATTAGGccaacacaataataaataaatacctgtaataaataataaatacatttgcatcCTTTAAACATGCGTTTTAAATTAGATGAAACCAAACATAATATAAGTAATACACAAATCATTGTGAATATGTAGACTGATATATGTGATCAGGTGTAAATTATATgtctaaaaaatgttgttttttatgtcaCAAGAGGGCGAAAGAGCACACTAAAGGGCAAACGatgaaatacatacagtaatcaTTTTGATTTGGTCCATTATAACTTAAGGCAAGaggctatttttttcttttttcatgtctGAAATGGGATGGAAGAAAATGTGCATGACTTGGAGTTGCAGAAGTTAGATTGGGGTTACAGTCAGTGTTACAGAACTGTGTACAGAACCCCCCCTTCTTAACCCCTCCCAGCACAGATCTTTCTGGTGAGGGAGAAAActcagatataaatataaagttcaGCCGTGATATGTGAGGAGCCCAGCCGAGCACAGCACAGAGACCCGGCCACTCGGAGGGACAGTGCCGCTGTGCACACCGTGTTGCGGGCGCAGAAGGcttgttagccagctagcttcaGCACGGGTCCAGCACAGAGCCTCACTGTCACTAACACCGACTTACCGGGTCTCCGCGCTCGCCGTGAACCTGATCCTAGAGTGAATTTGCGTGTATTGTAAAGTAAGACGTTTTCTTAGATAcagaacatataatataaagttaggGAGGATAAACTAGTTTGTAGGGGCGGGGTGGAGAGTGGGAGGGGGCACGGAACGTCTCCGGACAGAAAACAGCTGATAGCGCTGACAGGAACTTTTGTGATACGTTTCTAATCAGTCATAATCATTCGCTGTTGTTACTTACCATACTCcggatattttctttttaatgccaGTTCCACCATCTTTTTCCCTCTGGATTGGGCCATCGTAACAAGAAAGTGCAGTTTCACAGAGTAAAATTGCAGCGTCAAAAGAGTCCCGCGCGGTGTTCTCTATGGCAACAGTAACATCGCTGTGGCAACAGCGTAATTATTACGTGAAGTGATACAACAAAGAATGACAGTAACTGTCACGCTACAAGGCAAGAATACAGTAATGGCGTttactgcctttttgctttgctttactaGTAGTTTTTGTAGTTACTGTACAAACACCCACCAATTTTCTCCAAAACGACACACATTTGAGATGAGATATTTTGCTACATGACAAATAATGCTTtgaatgttacaaaaaacacaataactcatttttgccaaaaaatgcagttactgcctttttgctttgtAGGGCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5297 True 2254 lncRNA 0.46 1 15886114 15888367

Neighbor

gene id symbol gene type direction distance location
LOC111192347 NA coding upstream 111162 15731479 ~ 15774952 (+)
LOC103028185 NA coding upstream 124053 15733287 ~ 15762061 (+)
LOC103029544 NA coding upstream 156803 15709480 ~ 15729311 (+)
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding upstream 268327 15211657 ~ 15617787 (+)
akap1 akap1b,akap1 coding upstream 699719 15167460 ~ 15186395 (+)
LOC103027482 NA coding downstream 1838 15890205 ~ 15892830 (+)
LOC103026903 aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491 coding downstream 46141 15934508 ~ 15940392 (+)
LOC103027191 LOC108425812,LOC108277490 coding downstream 57361 15945728 ~ 15952683 (+)
LOC103025893 tpst1,LOC108425813,LOC108277496,LOC107662793,LOC107657564 coding downstream 119298 16007665 ~ 16069129 (+)
timm50 timm50,LOC107586258,LOC107729126,LOC107728222,LOC107662791 coding downstream 271391 16159758 ~ 16192568 (+)
G3894 NA non-coding upstream 113610 15763244 ~ 15772504 (+)
LOC111192856 NA non-coding upstream 221766 15660210 ~ 15664348 (+)
LOC111192011 NA non-coding upstream 230793 15639346 ~ 15655321 (+)
G3808 NA non-coding upstream 266943 15617118 ~ 15619171 (+)
G3855 NA non-coding upstream 348871 15536490 ~ 15537243 (+)
G4120 NA non-coding downstream 268145 16156512 ~ 16157533 (+)
G4158 supt5h,LOC107586261 non-coding downstream 405144 16293511 ~ 16310645 (+)
G4164 NA non-coding downstream 423574 16311941 ~ 16312669 (+)
G4167 NA non-coding downstream 425745 16314112 ~ 16314937 (+)
LOC111192356 NA non-coding downstream 461240 16349607 ~ 16350551 (+)
LOC103040601 NA other upstream 60011 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 723158 15072840 ~ 15162956 (+)
G3790 NA other upstream 847200 15038555 ~ 15038914 (+)
G3736 NA other upstream 922531 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1040488 14840293 ~ 14845626 (+)
G4221 NA other downstream 654575 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 730679 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2121811 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 2152922 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 2183597 18071964 ~ 18073663 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G234051 NA non-coding NC_053135.1 CM020932.1 11284792 ~ 11285090 (-)