LOC103030966


Basic Information

Item Value
gene id LOC103030966
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16531349 ~ 16536523 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604961.2
TTTGAAATGCGTACAGGCGGCGGAAGTGGCGTCATCAGATGAACATCTTGGGCGCTCCCAGACTCTAAACTCGGGCGGATAAAGAGCACAGCTAGGCTAGTCTCGCTAACGGCGATGTTTACGGTCAGTGGGATGGTTTCGGTGGGACAGGGTTAGCAGATCGCAGCGgctgtgttgttttttatcTCTATAGATTACGATTTAGGCAGAAATGGCGAAGTACGAGGTGTTTCAGAGCGAGACCGCGCTAATCATGAGTCTGCTGACCGAGGCGGCCCACGCTGAGATCTGCGCGCTGTTCGGCTGTCAGGCGGATTGGCCCGGGGAGCGCGGAGATCCGCGGAGCGCGGGGGAGACTGAGGCTGATCTCCGGACTGTACAACTCCGTGCTGTACTGGAGCTTCAAGCAAAGGAAGCAGTACGAAAAATATGCAGACTGTTTAAGTTCTGCAGTGTGGTGAAAGTGTCAAAAGCAGCAAATCCTGACAGTGCTTTTGAGGCACTGCCAATCGCAGGGCGTCTGATGTTTCAGCAACCAAGGCTGGCAGCTGGTCCCTCTGAGAATGCTCAAACAGGAGAGTCTGgaGTATCTGCTACGGTATCAGGGAATGTACAGAAAAAGCAGGTTCTTTCTGCATTACCAGAGAAAGCTCCTTCAAAGCTGGCAGCCATACAAGTTGATCAGagCTTTGCCGCAGAGGATGATGACGGCGCTGGTTTTTTGGAAGATGATGTGGAAAATCAGACAGTTGAAGgTGCATCCACAGCtgcaaatgctgtaaatgatcaAACTCAATCAGCTGAGCAAACTAACACCCAAGAAGAAATGTCTACAGACAAGCAGACATATGAATGCGAGAAATGTGGAAAGACGTTTGTAAAGTGGCACAATCTTGTGCAGCACAAGCGAAGACATGCAGAACCAGCCCCTTACTCCTGTGAGAAATGTGGAAAGAAGTACACATTTCAGAAAGCTCTAGAAAGTCACCAGTTGACAGGttgtgaaaagaaaaaggagctgcgtccctgccaaacatgcGGCAAGAGCTTCGTTGACCTGGAGAGTCATGAACGCATCCATTTGCAAGTGAAGCCATTCCTTTGCGGCGTATGTGGAAGAGGCTTCACTCTAGAGTACGTCCTGAAGGCACACCAGCGGCTCCATACAGGCGAGAAGCCGTACCAGTGCGAATTATGTGGCAAGCGCTTCACTCAGTCGAGCACGCTTTTAATCCACAAGGGGACACATACGGATGAAAAGCCATGGAGTTGCGAGCTCTGTGACAAGACCTTTAAACGGCGGGCCAATTTGAGGAAGCACCAGGTAGTTCACTCTGGAGAGAAGCCCCATACATGCGATACCTGCGggcaaaagtttagacacaggGAGAATCTGAAAAGGCACATGCGTAATCACCTGGGCATAAGGCCGTACAAGTGCAAGACGTGCGGCAAGCGCTACAGTCAGAAGAGCTCGTTGAAGGAGCACATGCCAGTGCACGGAGCGTCCAAGCCTTTCATGTGTGAGAAATGTGGCAAGACTTTTGTGTACAACTACACACTCAGAAATCACATGCGAACACACGAGGGTTCTGTCGaagagtctggagctgagaagaaccCCCAGCGCTGCGATGTCTGCGGCAAGTGCTACAGCACCACTTATACTCTGAAAATGCACCAGAGGATTCATTCTGAAAGTGATCCTCTCACCTGTAAGGTATGCGGCAAGACCTTCAGCAGCACAGCAGGCCTTTACACACACGAGCAGCAGCACTCTGGGCTGAATGCGTCCGAATGTGTAATATGCAAAAAGACATTTGTCAACAAAGCCTATCTGAAAGTGCATATGCTCCTGCACAATAATGAGAAACCCTACAAATGTTCCATTTGTCCAAAGGCCTTCAACCTGGCCAACGGACTGAAGATGCACATGCTCATTCACACCGGGGAGAAACCACACAAGTGCGACATATGTGGAATGTCCTTCCGCACCGCTGGAAACTTACGCAGACACAAGCGcgttcacaccggagagaagccGTTCAGCTGTGAAATCTGCGGTAAAAGCTTCAGCCAGCCTAATAATGTGAGGGCCCACATGCAGATTCACACTGGAGTCAAACCGTACAGCTGTCAGAAGTGTGGGAAGAAGTATGCTTATCTTAGGAATTACAACGATCACAAATGTATGTGATGCAGTGCCTAGTCTAAGCCATTTAATATGGTCTTGCTGTTTAATGGGCTTTGAatggttttttttaattggctttCTTTCTAGTGTTACGATTTAAACACTTGAAATATGACAGACCTTGTAGTTATTTGACAAATGTTATTTAGCCACAGCAGACTGTTCAAAACCGTGTACAGAATCAGGATGAATAAATTttctcatataaaaaaaaagaa
>XM_022668852.1
AGCAGCAAATCCTGACAGTGCTTTTGAGGCACTGCCAATCGCAGGGCGTCTGATGTTTCAGCAACCAAGGCTGGCAGCTGGTCCCTCTGAGAATGCTCAAACAGGAGAGTCTGgaGTATCTGCTACGGTATCAGGGAATGTACAGAAAAAGCAGGTTCTTTCTGCATTACCAGAGAAAGCTCCTTCAAAGCTGGCAGCCATACAAGTTGATCAGagCTTTGCCGCAGAGGATGATGACGGCGCTGGTTTTTTGGAAGATGATGTGGAAAATCAGACAGTTGAAGGCACcttgccctgcacattttagtgctttcccTACACACCCCTGCAACTCTGAAAGGATTAACGAGGGATCAGTTAAGGATCAgttaggTGCATCCACAGCtgcaaatgctgtaaatgatcaAACTCAATCAGCTGAGCAAACTAACACCCAAGAAGAAATGTCTACAGACAAGCAGACATATGAATGCGAGAAATGTGGAAAGACGTTTGTAAAGTGGCACAATCTTGTGCAGCACAAGCGAAGACATGCAGAACCAGCCCCTTACTCCTGTGAGAAATGTGGAAAGAAGTACACATTTCAGAAAGCTCTAGAAAGTCACCAGTTGACAGGttgtgaaaagaaaaaggagctgcgtccctgccaaacatgcGGCAAGAGCTTCGTTGACCTGGAGAGTCATGAACGCATCCATTTGCAAGTGAAGCCATTCCTTTGCGGCGTATGTGGAAGAGGCTTCACTCTAGAGTACGTCCTGAAGGCACACCAGCGGCTCCATACAGGCGAGAAGCCGTACCAGTGCGAATTATGTGGCAAGCGCTTCACTCAGTCGAGCACGCTTTTAATCCACAAGGGGACACATACGGATGAAAAGCCATGGAGTTGCGAGCTCTGTGACAAGACCTTTAAACGGCGGGCCAATTTGAGGAAGCACCAGGTAGTTCACTCTGGAGAGAAGCCCCATACATGCGATACCTGCGggcaaaagtttagacacaggGAGAATCTGAAAAGGCACATGCGTAATCACCTGGGCATAAGGCCGTACAAGTGCAAGACGTGCGGCAAGCGCTACAGTCAGAAGAGCTCGTTGAAGGAGCACATGCCAGTGCACGGAGCGTCCAAGCCTTTCATGTGTGAGAAATGTGGCAAGACTTTTGTGTACAACTACACACTCAGAAATCACATGCGAACACACGAGGGTTCTGTCGaagagtctggagctgagaagaaccCCCAGCGCTGCGATGTCTGCGGCAAGTGCTACAGCACCACTTATACTCTGAAAATGCACCAGAGGATTCATTCTGAAAGTGATCCTCTCACCTGTAAGGTATGCGGCAAGACCTTCAGCAGCACAGCAGGCCTTTACACACACGAGCAGCAGCACTCTGGGCTGAATGCGTCCGAATGTGTAATATGCAAAAAGACATTTGTCAACAAAGCCTATCTGAAAGTGCATATGCTCCTGCACAATAATGAGAAACCCTACAAATGTTCCATTTGTCCAAAGGCCTTCAACCTGGCCAACGGACTGAAGATGCACATGCTCATTCACACCGGGGAGAAACCACACAAGTGCGACATATGTGGAATGTCCTTCCGCACCGCTGGAAACTTACGCAGACACAAGCGcgttcacaccggagagaagccGTTCAGCTGTGAAATCTGCGGTAAAAGCTTCAGCCAGCCTAATAATGTGAGGGCCCACATGCAGATTCACACTGGAGTCAAACCGTACAGCTGTCAGAAGTGTGGGAAGAAGTATGCTTATCTTAGGAATTACAACGATCACAAATGTATGTGATGCAGTGCCTAGTCTAAGCCATTTAATATGGTCTTGCTGTTTAATGGGCTTTGAatggttttttttaattggctttCTTTCTAGTGTTACGATTTAAACACTTGAAATATGACAGACCTTGTAGTTATTTGACAAATGTTATTTAGCCACAGCAGACTGTTCAAAACCGTGTACAGAATCAGGATGAATAAATTttctcatataaaaaaaaagaa

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03022 Basal transcription factors
ko03420 Nucleotide excision repair
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604961.2 True 2412 mRNA 0.48 5 16531349 16536523
XM_022668852.1 False 2029 mRNA 0.47 5 16533090 16536523

Neighbor

gene id symbol gene type direction distance location
exoc3l2 exoc3l2,exoc3l2b,LOC107729130,LOC107597542 coding upstream 1107 16482196 ~ 16530242 (+)
LOC103047564 ppp1r14a,ppp1r14ab,LOC103047564,LOC108425826,LOC107729097,LOC107586311,LOC107597604,LOC107662758 coding upstream 54244 16454684 ~ 16477105 (+)
LOC103022964 LOC103022964 coding upstream 239229 16280969 ~ 16292120 (+)
LOC103022345 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 coding upstream 254516 16271162 ~ 16276833 (+)
dll3 NA coding upstream 319844 16205897 ~ 16211505 (+)
LOC107197545 NA coding downstream 1948 16538471 ~ 16542443 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding downstream 24963 16561486 ~ 16617930 (+)
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding downstream 96800 16633323 ~ 16643820 (+)
LOC111192859 sae1,LOC107718284 coding downstream 152711 16689234 ~ 16691759 (+)
lsamp lsamp coding downstream 917827 17454350 ~ 17873816 (+)
G4214 NA non-coding upstream 50697 16480335 ~ 16480652 (+)
LOC111192355 NA non-coding upstream 164660 16356282 ~ 16366689 (+)
LOC111192356 NA non-coding upstream 180798 16349607 ~ 16350551 (+)
G4167 NA non-coding upstream 216412 16314112 ~ 16314937 (+)
G4164 NA non-coding upstream 218680 16311941 ~ 16312669 (+)
G4277 NA non-coding downstream 142882 16679405 ~ 16681219 (+)
G4331 NA non-coding downstream 608398 17144921 ~ 17145205 (+)
G4334 NA non-coding downstream 618237 17154760 ~ 17155096 (+)
G4337 NA non-coding downstream 621121 17157644 ~ 17157851 (+)
G4346 NA non-coding downstream 652509 17189032 ~ 17189246 (+)
LOC103040601 NA other upstream 705246 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 1368393 15072840 ~ 15162956 (+)
G3790 NA other upstream 1492435 15038555 ~ 15038914 (+)
G3736 NA other upstream 1567766 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1685723 14840293 ~ 14845626 (+)
G4221 NA other downstream 6419 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 82523 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 1473655 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 1504766 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 1535441 18071964 ~ 18073663 (+)

Expression


Co-expression Network