psmd2 (psmd2)


Basic Information

Item Value
gene id psmd2
gene name psmd2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 20521214 ~ 20536207 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247674.3
GGGGTGGATGTTAGCAGTGTAACACGCCGGCGGCGGCAGTAGaagcgcagtgtgtgtgtgtttccttttatttgtatttgacGGAGAAACAGCAGCGCGGAGTCGCGATGGAGGAGTCTAAGAACAAGGAGAAGAAGCAGCAGGAGAAGccggaggagaaggagaagcaGCCGGCggggaaagagaaggagaagaaggaggacCAGGAGCTGTCTGAAGAAGACAAGCAGTTGCAAGAGGAGCTGGAATTGATGGTCGAGAGACTTGGTGAGAAGGATACCTCTCTTTACCATCCTGCACTGGAGGAGTTGCGTCGGCAGATTCGTTCATCCACAACCTCCATGACTTCAGTACCCAAACCGCTGAAGTTTCTGCGACCACATTATGGCAAGCTTAAGGAAATCTATGAAGGGATGGCTCCTGGAGAAAAcaagCATTTCTGTGCTGATGTGGTGTCTGTCCTTGCCATGACCATGAGtggtgagagagagtgtttgaAATATCGCCTGTTGGGCTCGCAAGAGGAGTTGGCGTCCTGGGGGCACGAGTATGTCAGGCACCTTGCAGGAGAAGTGGCTAAAGAGTGGCAGGAGATTGAGGAGGGCGATAAGGTGCAACAGGAGACTCTGCTAAAGCTGGTTAAAGAGATTGTGCCCTATAACATGGCCCACAATGCTGAGCACGAAGCCTGCGACCTGCTCATGGAGATCGAGCATCTCGACATGTTGGAGATGTACATCGATGAAAACGCGTATGCTAAAGTCTGCCTCTACCTCACAAGCTGTGTGAGTTACGTTCCTGAGCCGGAGAACTCTGCTTTGCTGAAGTGTGCGCTGAAAATCTTCCGCAAGTTCAATCGTTATCCAGAAGCCCTCAGACTGGCGCTCATGCTCAACGATGTGGAGCTTGTAGAGAACATCTTTACCTCCTGCAAAGACATTGTGGTTCAGAAGGAGATGGCATTTATGCTGGGCAGACATGGCATGTTTCTGGAGCTGAATGAAGACGTGGAGGATTATGAAGACCTGACCGAGATCATGTCCAACGTACAGCTCAACAGCAACTTCCTTGCCCTCGCTCGTGAGTTGGATATCATGGAGCCCAAAGTGCCAGATGACATTTATAAAACCCACCTGGAGAACAACAGATTTGGTGGCAGCGGCTCTCAAGTGGATTCTGCTCGAATGAACCTGGCATCTTCCTTTGTAAACGGGTTTGTTAACGCAGCATTTGGACAGGACAAACTTCTGACTGAGGACGGCAACAAGTGGCTGTATAAGAACAAGGACCACGGAATGTTGAGTGCTGCTGCCTCTCTGGGTATGATCCTGTTGTGGGATGTGGATGGCGGCCTCACTCAGATTGACAAATATCTCTACTCTTCTGAAGACTACATCAAGTCTGGGGCCCTGTTAGCATGTGGTATAGTGAACTCTGGAGTTCGTAACGAATGTGACCCAGCTTTGGCTCTTCTCTCTGATTACGTCCTGCACAACAGCAACGTCATGAGGATAGGAGCCATCTTTGGgcttgGTCTGGCTTATGCAGGCTCTAACAGAGAGGACGTCCTCTCGCTTTTGCTGCCGGTCATGGGAGATTCCAAGTCCAGCATGGAGGTTGCCGGTGTGACTGCACTGGCCTGCGGGATGATCGCTGTGGGCTCCTGTAATGGGGATGTCACTTCCACCATTCTGCAGACCATTATGGAAAAGAATGAGCAGGAGCTGAAAGACACGTACGCCCGCTGGCTCCCCCTCGGCCTGGGACTCAACCACCTCGGCAAAGGAGAGGCAATTGAGACTACTTTGGCAGCTCTGCAGGTTGTCCCAGAACCTTTCCGTAGCTTCTCAAACACACTTGTGGACATCTGTGCCTATGCAGggTCTGGTAATGTTTTGAAGGTGCAGCAGTTGTTGCACACCTGCAGTGAGCACTACGACAACACAAAGGACAAAGATGAGGACAAAGAcaagaaagacaaaaaggacAAGGACAAGAAAGAAAGTGCAGCAGACATGGGCTCCCACCAGGGTGCGGCTGTGCTGGGAATTGCACTCATCGCTATGGGAGAGGAGATTGGATCGGAGATGGCACTGCGCACATTTGGCCACCTGtTGCGCTATGGGGAGCCCACTCTGCGCAGAGCGGTACCGTTAGCGTTGGCTCTGATCTCAGTTTCCAACCCCCGACTCAACATTCTGGACACACTTAGTAAGTTCTCCCACGACGCCGACCCTGAAGTGTCCCACAACTCCATCTTCGCCATGGGCATGGTGGGCAGCGGAACCAATAATGCACGACTTGCAGCTATGCTGCGACAACTGGCCCAGTACCACGCCAAGGACCCCAACAACCTGTTCATGGTCCGACTTGCACAGGGTCTGACTCATCTGGGGAAAGGGACGTTGACCCTGTGTCCCTACCACAGCGACCGGCAGCTCATGAGTCAGGTAGCAGTCGCCGGACTCCTCACAGTCCTTGTGTCCTTCCTTGATGTCAAAAACATAATCCTGGGAAAATCACACTACGTACTGTACGGACTTGTAGCAGCAATGCAACCTCGTATGCTCGTCACATTTGACGAAGAACTGCGGCCACTGCCAGTCTCTGTCCGGGTGGGACAGGCTGTTGACGTGGTGGGACAGGCAGGCAAGCCTAAAGCAATCACAGGCTTtcagacacacaccacaccagtGCTGCTGGCTCACGGAGAGAGAGCGGAGCTGGCCACAGAAGAATATCTCCCAGTCACCCCCATACTGGAGGGCTTCGTCATCCTGCGCAAGAATCCCAACTACGATGCTTAGATACACAAACGCACACATACCCTGTAATTGAGTGTTTTCCAGTCCGGGTCATTATGTACCCCCCATTCTCTGCA

Function

symbol description
psmd2 Predicted to enable enzyme regulator activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of proteasome complex. Is expressed in eye and neural tube. Orthologous to human PSMD2 (proteasome 26S subunit ubiquitin receptor, non-ATPase 2).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 2

GO:

id name namespace
GO:0042176 regulation of protein catabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0000502 proteasome complex cellular_component
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
K03028 PSMD2, RPN1; 26S proteasome regulatory subunit N1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247674.3 True 2881 mRNA 0.52 22 20521214 20536207

Neighbor

gene id symbol gene type direction distance location
LOC111192961 NA coding upstream 679237 19841219 ~ 19841977 (+)
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding upstream 1419896 19068463 ~ 19101318 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding upstream 1591394 18905646 ~ 18929820 (+)
fat3 fat3,fat3a,LOC107564369 coding upstream 1650395 18666879 ~ 18870819 (+)
LOC103035466 NA coding upstream 2022083 18487006 ~ 18499131 (+)
LOC107197593 NA coding downstream 1513 20537720 ~ 20545404 (+)
LOC103036360 NA coding downstream 9333 20545540 ~ 20548431 (+)
LOC111192413 NA coding downstream 19252 20555459 ~ 20557658 (+)
LOC111192969 NA coding downstream 35195 20571402 ~ 20575427 (+)
eif4g1 LOC108280304,LOC103370583 coding downstream 48939 20585146 ~ 20637948 (+)
G4951 NA non-coding upstream 35049 20485825 ~ 20486165 (+)
G4949 NA non-coding upstream 66721 20452126 ~ 20454493 (+)
G4940 NA non-coding upstream 135959 20384764 ~ 20385255 (+)
LOC111192871 NA non-coding upstream 140919 20379244 ~ 20380295 (+)
G4932 NA non-coding upstream 216289 20304689 ~ 20304925 (+)
G4994 NA non-coding downstream 167553 20703760 ~ 20704500 (+)
G5003 NA non-coding downstream 220968 20757175 ~ 20762971 (+)
G5012 NA non-coding downstream 346604 20882811 ~ 20883093 (+)
G5028 NA non-coding downstream 446036 20982243 ~ 20982748 (+)
G5036 NA non-coding downstream 551767 21087974 ~ 21160121 (+)
G4775 LOC108411134 other upstream 1355583 19160731 ~ 19165631 (+)
G4612 NA other upstream 1761356 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 2098858 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 2447551 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 2509111 18010178 ~ 18012103 (+)
LOC107197594 NA other downstream 12984 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 22316 20558523 ~ 20582874 (+)
G5026 NA other downstream 447500 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 1520315 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 1871349 22407556 ~ 22524746 (+)

Expression


Co-expression Network