LOC111192961


Basic Information

Item Value
gene id LOC111192961
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 19841219 ~ 19841977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671405.1
ATGAGAATCAGCGCCTCCAAGTCCGAGGCCATGGTCCTGAGCCGGAAAAGGGTAGAATGCCTTCTCCGGGTTGGGGAGGAGGTCCTGCCTCAAGTGGAGGAGTTTAAGTATCTTGGGGTCTTGTTCACGAATGAGGGAAAGATGGAGCGGGAGATCGACAGACGGATCGGTGCTGCGTCAGCAGTCATGCGGGCGCTGTACGGGTCCGTCGTGGTGAAGAGAGAGCTGAGCCAAAAAGCAAAGCTCTCGGTTTACCAGTCGATCTACGTTCCTACCCTCATCTATGGTCATGAGCTTTGGGTCATGACCGAAAGAACGAGATCACGGATACAAGCGGCCGAAATGAGTTTCCTTCGCAGGGTGTCTGGGCTCTCCCTTAGAGATAGGGTGAGGAGCTCAGTCATCCGGGAGGGACTCAGAGTAGAGCCGCTGCTTCTCCACATCGAGAGGAGCCAGTTGAGGTGGCTTGGGCATCTGATTAGGATGCCTCCTGACGCCTCCCTGGTGAGGTGTTTCGGGCACGTCCCACCGGGAGGAGGCCCAGGGGAAGACCCAGGACACGCTGGAGGGACTATGTCTCTCGGTTGGCCTGGGAACGCCTTGGAATTCCCCCGGACGAGCTGGCCCAAGTGGCTGGGGAGAGGGAAGTCTGGGTTTCCCTGCTTAGGCTGCTGCCCCCGCGACCCGACCCTGGATAAGCggaggaaaatggatggatggatgggtattCTAAAAACAGCATGCTGGGGCGACGAATGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671405.1 True 759 mRNA 0.58 1 19841219 19841977

Neighbor

gene id symbol gene type direction distance location
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding upstream 739901 19068463 ~ 19101318 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding upstream 911399 18905646 ~ 18929820 (+)
fat3 fat3,fat3a,LOC107564369 coding upstream 970400 18666879 ~ 18870819 (+)
LOC103035466 NA coding upstream 1342088 18487006 ~ 18499131 (+)
trnag-ucc NA coding upstream 1437443 18403705 ~ 18403776 (+)
psmd2 psmd2 coding downstream 679237 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 695743 20537720 ~ 20545404 (+)
LOC103036360 NA coding downstream 703563 20545540 ~ 20548431 (+)
LOC111192413 NA coding downstream 713482 20555459 ~ 20557658 (+)
LOC111192969 NA coding downstream 729425 20571402 ~ 20575427 (+)
G4902 NA non-coding upstream 55591 19785354 ~ 19785628 (+)
G4892 LOC107374453 non-coding upstream 105579 19733521 ~ 19735640 (+)
G4853 NA non-coding upstream 192386 19639376 ~ 19648833 (+)
G4809 NA non-coding upstream 562203 19278771 ~ 19279016 (+)
G4761 NA non-coding upstream 689172 19104769 ~ 19152047 (+)
G4919 NA non-coding downstream 354866 20196843 ~ 20197053 (+)
G4930 NA non-coding downstream 459885 20301862 ~ 20302429 (+)
G4932 NA non-coding downstream 462712 20304689 ~ 20304925 (+)
LOC111192871 NA non-coding downstream 537267 20379244 ~ 20380295 (+)
G4940 NA non-coding downstream 542787 20384764 ~ 20385255 (+)
G4775 LOC108411134 other upstream 675588 19160731 ~ 19165631 (+)
G4612 NA other upstream 1081361 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 1418863 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 1767556 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 1829116 18010178 ~ 18012103 (+)
LOC107197594 NA other downstream 707214 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 716546 20558523 ~ 20582874 (+)
G5026 NA other downstream 1141730 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 2214545 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 2565579 22407556 ~ 22524746 (+)

Expression


Co-expression Network