LOC103030891 (LOC108278224,LOC107558831,LOC107705626)


Basic Information

Item Value
gene id LOC103030891
gene name LOC108278224,LOC107558831,LOC107705626
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 19068463 ~ 19101318 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231017.3
ActtattaaaacttaaaaaaacggATTTTGCTCAAATGCTCAATaggaacccattcattttggactcccTCACTAGCGCCCTCCAATGTCTGAGAGCCACTGAAACACCATGGTTTAGTGGGTGTTCTCCTCTGTATAAGCTCTGTGGCAGGACTGGGTTTAgtagcgctgctgctgctggtgaggAGAAGTTTGGACTCTTCCACATTAAAAATTAGCATTAAAATATCAGCGCAGATCCGCTATATTCCCTCTAAATGACGACTTGCGGTTAATTAAACACTCAGACGGCGATAATGGATGCAGTTAAGGCCTTTAACGTGGAGATGCTGTCCATGATGGACATGAAGCCTCCAATTTCCAGAGCCAAGATGATGTCCATCACGAAAGCTGGAATAAAAGCAATCAAgCTGTATAAACATGTTGTCCAGATAATTGAGAAATTCATCAAGAGGTGTGGGCCGGAGCTGAAGGTTCCAGGGCTGTATGTGGTGGACTCTATTATCAGGCAGTCTCGACATCAGTTCGGAGAAGATAAAGATgtgttcgggccgagatttctgAAGAACATGAATGAAACCTTCCAGAGCCTCTACCAGTGTCCTCCAGACGATAAAGCAAAGATCCTGCGTGTGCTGAATTTATGGCAGAAGAACTCTGTGTTTGGGATGGATGTCATTCAGCCCCTGCTGGACCTGGCTACAGCTTCGTTTACACCTGTCCTGGAGAATGGTACTACCCTAGAAGGGTCTCCAGCTGCCCAGCTACCCTCTGTATCTGTCCCCGCTGCTCTGGACCAGCCTGTCACTACGAGAATCTTTTCTGAACAACCAAACCCGGCGGCTCTACCCCAGCTCCAGAACCTGAACGCTCTGCCCCAGCAGCAACCCCAAGTTCAGAACCCGGCGGTTATTCCTCAAATTCCTCAGTTTCAGAACCTGAACGCTCTGCCCCAGCAGCTACCCCAGGTTCAGAACCCGGCAATTATGCCTCAAATTCCCCAGTTCCAGAACCTGGCGACTATGCCCCAGATACCACAGCATCACAACCCAACAGCTCTGCCCCAGCTGCAGAACCCGTCAACTGTGCAGCCACTACAGAACGTTGCAGCTCTGCCCCAGCAGCAGAGCCCAGCGGCTGCCCCGCCACTGCAGAACCCAGCGGCTCTCGCTGCCGTCACTCAGTTCTTACAGTCTGCTCAGGGCTTAAATCTCCAGCAGATGCTGCAGAATCTTCAGCAGGGAGGTGCTAATGCGCAGCCAGCAGCCCAGACTGCTGCACCCACCCAGCAGAAAAGCTCAATTGCAAAGGTCTTACTGGACCGTTTTGATTATGATGAGGAACCGGATGCGGTGGAGGAGCCAACTCAGGAGGAAACGACTCCTGCTGTGTCTGCAGCTGTAAACCTTGAAGCCCTCCAGCAAGCTTTGCAAGCCCACCTTTTAGGCCAGCTTTCCAGCCAGTTGCTTCCTAATGAGCAGGCAGCGCCACAGAACTTGCCGGTTCCACAGACAGTGGCTGGTTTGGTGCAGGCCAACGGTCAAGGACAGGCCATCCTTCCACACAGCCAGTTACAAGGAGCTTCTGAGACACTACAGACCCAAAACCATGGTCATGTTGAAGCAGAACTGCCGGTACAGGACGTACCACTGGAGTCCCCTCAGCCCAGGAGAGATGAAAGGGATTCGAGGTACAGCAGACGATCACGGTCCAGGTCTCCTAGAAGACGGTCATCCTCACACTCGAGGAGATCCCGCTCCGGGTCTCGGTCACGTCGCTCGAGGTTTCGTCGCTCACGGTCTCGCTCCAGGGAGCGGAGGAGGGGCTCTCCCAGGAGGCGGGCGGACGACAGGCGAACAGATGACAGGAGGAGGGATGACAGGAGGGTAGACGACAGGAGGGCGGATGACAGGCGAGCAGATGACCgacatgaaagagagagaaaacagaaaggttTTCCTTCCACCAAGAGAGAAACGCTCACCGTGTGCAGCACAACTCTGTGGATCGGTCAGCTGGATAAGaaaacccagcagcaggacgtCACCAGCCTGATTGAAGAGTTTGGACAGGTCGAATCAGTCAATATGATTCCACCAAGAGGCTGTGCCTACGTAGTCATGGTGCACAGACAGGATGCCTACACAGCCCTGACCAAGCTTAGCAGAGGCAGCGCCAAAATCAACCACAAACCCTTCAAGATTGCGTGGgcgcttaataaaggagtaaactCGCGATTTAAGAAGTATTGGGACGTGGACCTGGGAGTCACATACATCCCCTGGAGTAAGCTGAAGACTGCTGAGATATTGGGTCTGCGAGAGGGAGGCACACTGGACCAGGACTCTTTCAAACCAGAGTGGGTGTCGATGCTGGACGACCTGCTGAAACCAGTGGGAGATAACCGAGGAAAGCTTGAAGGAGGAGATGGTGAAGGAGCTGCTGTCGCCGCGGCTGGGCCACAGGTTCCAGTAGTGAATGTAGAAGTTGCGAGGTCTCCTGCTGCTGTGACCCCTGCTGTTACCTCACCCCCCCACAAACACTTAGCACCAGACCAGCCAGATGTTCCCTCAGCAAACCCAACAGAAGGCAAAGAGAATCAGACTGAATCCCCTGAAGTTCTCCTGCCCACCAGCCCTCCTGCTGTACCCTTTGTTGGAACAGGGCCCGGACCCCTGCAGCATCCTCCAAGACCCCTTCCTCCGTTTACTTCACCATTCCCCAACAACATGCATCCAAACATGACTCCAATGAACACGCCCCATCCAAACATGCCTCCTATGCGTATGCCTCAGCCAATGATGATACCCCAGGGCCCCATGTTCAGAGAGAGACCACCACGACCCACTGGACCCATTGGACCAATGGGACCCCAAGGACCGATGGGACCTCAGAGACCTATAGGACCCCATGGACCTATGGGACCCCAGAGACCTATGGGGCCCCAGAGACCTATTGGACCCCAGAGGCCTATGGGACCCCAGGGACCTATCGGACCCCCAGGACCCTTGGGCCCCCCTGGCAGGTTCAGGATGCCAATGCGTGGCCCACGTGAAGGATTCCCGCACCCTAGGGAGGGGTTCCAACCCCCTAGAGAAGGCTTTCAACCCCCCAGGCCAAGGTTCCCACCTTCAGGACCCATGGAGGGGGAGAACTGGGACCATGGCCCTTTGATGAATGACTGGCATGACAATGGGCCCAACAGGGGTCCAGAATGGTTTGGAGAGGAGCCTCCCTTCAGACGTGGAGGGTGGGGCCGAGGTGGCCCAAGGGGACGAGGCCATTTCTGAACCTGAGATTTAAAGCTGGGTGTTCTTAAAGAACTGAAAGAAGTTTGAAAGATTGGCCTCACTAACTATTAAGACTTTTGTTGCTACGGACAAACGTGGACTTCTGAGGTTACGTGTGCCAATAAACATGAGCCCCAATGGTCAGGCTGTTTCAGGAGTGAGTGAACTTTGAGTGTGTGCGCAAGACTGTTAAAAGGTCATCTCTACTGAAGTAAAGGGCGAATTGTACTTCTATGTCGAGTCAAGGCAGAGTCTACAGTGCAAGTGACACACGCCAATGTGGGCATTTATACTTGTGCGCTGGTGTGTCTGCAGTTCTTTGCGGTTACtccattaaaacagtaatgtaAAGGCGGGAATATGATGCTtagtggaccaatcacagttgcTAAGATCTCCAGCACTGTGACAGCAACAGGCTATGCCATAGGCTACAGCATAGATTCAGTGCATTAAATTCTGCACAGAAGCATAAATCAGCCTTAAGTGTGGCATTGTGAGGTCATTTTGGAATAGCGCCCTTTCAGAAGACTGCTTTGGGAGGTGACCTTTAATCCCCAATAGAACGTTTTAATTGGGCCTGAAATTAGGCAAAGTTACTATTGAAACAATTCTGAGGTCACGTGTGTCAGCGAATGTGACTTGAGGTCGCAAAGACATTTAGCCAattcttttaaaacttttcaaAACTACAAGACTGTCATTTCTATCAAACTTAGGATGTCGTTCTCAGGTCACATGTGCTCAATAAACATGACTGGACCTAAACGGACATGTTtaagtccccccccccccccccccccccccccccccacagacTGTAGACTTTGGGTCTCTGTGAACTCTACAAGGCTATAGAAATGTCACTGCTGTTAAAATAAGTAGGCCATTCTGTGATCACGTGGGCCAACAACATGTCCAGGTGGAAAGATCTGCCCGCTGGGGAAGGTGATTTTAAATCCCCAAAGACTGTTTCTAAGGTTTGGGCTCCAGCTTGAATCCAGTGAAGACGAATGGGTTGCAGTAGAAATGTCATTGCCTTGGTAATATATGCGTGATCCTGGAGTCACGTGAGTCCGTTACCAGAGTTTTCTTCGTGTTTGAAGAATCCAGCAGGCTGTTGACTTCAAGTGTAATttagtttaagttttaagaCTGTAGAAACCTTTTTTCCATTCTAGGGTATCGTGTGGCTGTACACATGAATGGGCCTCAGGGCTACtttctgtaaaaatatttttcatgttGAAATAAATGGAGTATTTCAAGG
>XM_007231018.3
attaaaacttaaaaaaacggATTTTGCTCAAATGCTCAATaggaacccattcattttggactcccTCACTAGCGCCCTCCAATGTCTGAGAGCCACTGAAACACCATGGTTTAGTGGGTGTTCTCCTCTGTATAAGCTCTGTGGCAGGACTGGGTTTAgtagcgctgctgctgctggtgaggAGAAGTTTGGACTCTTCCACATTAAAAATTAGCATTAAAATATCAGCGCAGATCCGCTATATTCCCTCTAAATGACGACTTGCGGTTAATTAAACACTCAGACGGCGATAATGGATGCAGTTAAGGCCTTTAACGTGGAGATGCTGTCCATGATGGACATGAAGCCTCCAATTTCCAGAGCCAAGATGATGTCCATCACGAAAGCTGGAATAAAAGCAATCAAgCTGTATAAACATGTTGTCCAGATAATTGAGAAATTCATCAAGAGGTGTGGGCCGGAGCTGAAGGTTCCAGGGCTGTATGTGGTGGACTCTATTATCAGGCAGTCTCGACATCAGTTCGGAGAAGATAAAGATgtgttcgggccgagatttctgAAGAACATGAATGAAACCTTCCAGAGCCTCTACCAGTGTCCTCCAGACGATAAAGCAAAGATCCTGCGTGTGCTGAATTTATGGCAGAAGAACTCTGTGTTTGGGATGGATGTCATTCAGCCCCTGCTGGACCTGGCTACAGCTTCGTTTACACCTGTCCTGGAGAATGGTACTACCCTAGAAGGGTCTCCAGCTGCCCAGCTACCCTCTGTATCTGTCCCCGCTGCTCTGGACCAGCCTGTCACTACGAGAATCTTTTCTGAACAACCAAACCCGGCGGCTCTACCCCAGCTCCAGAACCTGAACGCTCTGCCCCAGCAGCAACCCCAAGTTCAGAACCCGGCGGTTATTCCTCAAATTCCTCAGTTTCAGAACCTGAACGCTCTGCCCCAGCAGCTACCCCAGGTTCAGAACCCGGCAATTATGCCTCAAATTCCCCAGTTCCAGAACCTGGCGACTATGCCCCAGATACCACAGCATCACAACCCAACAGCTCTGCCCCAGCTGCAGAACCCGTCAACTGTGCAGCCACTACAGAACGTTGCAGCTCTGCCCCAGCAGCAGAGCCCAGCGGCTGCCCCGCCACTGCAGAACCCAGCGGCTCTCGCTGCCGTCACTCAGTTCTTACAGTCTGCTCAGGGCTTAAATCTCCAGCAGATGCTGCAGAATCTTCAGCAGGGAGGTGCTAATGCGCAGCCAGCAGCCCAGACTGCTGCACCCACCCAGCAGAAAAGCTCAATTGCAAAGGTCTTACTGGACCGTTTTGATTATGATGAGGAACCGGATGCGGTGGAGGAGCCAACTCAGGAGGAAACGACTCCTGCTGTGTCTGCAGCTGTAAACCTTGAAGCCCTCCAGCAAGCTTTGCAAGCCCACCTTTTAGGCCAGCTTTCCAGCCAGTTGCTTCCTAATGAGCAGGCAGCGCCACAGAACTTGCCGGTTCCACAGACAGTGGCTGGTTTGGTGCAGGCCAACGGTCAAGGACAGGCCATCCTTCCACACAGCCAGTTACAAGGAGCTTCTGAGACACTACAGACCCAAAACCATGGTCATGTTGAAGCAGAACTGCCGGACGTACCACTGGAGTCCCCTCAGCCCAGGAGAGATGAAAGGGATTCGAGGTACAGCAGACGATCACGGTCCAGGTCTCCTAGAAGACGGTCATCCTCACACTCGAGGAGATCCCGCTCCGGGTCTCGGTCACGTCGCTCGAGGTTTCGTCGCTCACGGTCTCGCTCCAGGGAGCGGAGGAGGGGCTCTCCCAGGAGGCGGGCGGACGACAGGCGAACAGATGACAGGAGGAGGGATGACAGGAGGGTAGACGACAGGAGGGCGGATGACAGGCGAGCAGATGACCgacatgaaagagagagaaaacagaaaggttTTCCTTCCACCAAGAGAGAAACGCTCACCGTGTGCAGCACAACTCTGTGGATCGGTCAGCTGGATAAGaaaacccagcagcaggacgtCACCAGCCTGATTGAAGAGTTTGGACAGGTCGAATCAGTCAATATGATTCCACCAAGAGGCTGTGCCTACGTAGTCATGGTGCACAGACAGGATGCCTACACAGCCCTGACCAAGCTTAGCAGAGGCAGCGCCAAAATCAACCACAAACCCTTCAAGATTGCGTGGgcgcttaataaaggagtaaactCGCGATTTAAGAAGTATTGGGACGTGGACCTGGGAGTCACATACATCCCCTGGAGTAAGCTGAAGACTGCTGAGATATTGGGTCTGCGAGAGGGAGGCACACTGGACCAGGACTCTTTCAAACCAGAGTGGGTGTCGATGCTGGACGACCTGCTGAAACCAGTGGGAGATAACCGAGGAAAGCTTGAAGGAGGAGATGGTGAAGGAGCTGCTGTCGCCGCGGCTGGGCCACAGGTTCCAGTAGTGAATGTAGAAGTTGCGAGGTCTCCTGCTGCTGTGACCCCTGCTGTTACCTCACCCCCCCACAAACACTTAGCACCAGACCAGCCAGATGTTCCCTCAGCAAACCCAACAGAAGGCAAAGAGAATCAGACTGAATCCCCTGAAGTTCTCCTGCCCACCAGCCCTCCTGCTGTACCCTTTGTTGGAACAGGGCCCGGACCCCTGCAGCATCCTCCAAGACCCCTTCCTCCGTTTACTTCACCATTCCCCAACAACATGCATCCAAACATGACTCCAATGAACACGCCCCATCCAAACATGCCTCCTATGCGTATGCCTCAGCCAATGATGATACCCCAGGGCCCCATGTTCAGAGAGAGACCACCACGACCCACTGGACCCATTGGACCAATGGGACCCCAAGGACCGATGGGACCTCAGAGACCTATAGGACCCCATGGACCTATGGGACCCCAGAGACCTATGGGGCCCCAGAGACCTATTGGACCCCAGAGGCCTATGGGACCCCAGGGACCTATCGGACCCCCAGGACCCTTGGGCCCCCCTGGCAGGTTCAGGATGCCAATGCGTGGCCCACGTGAAGGATTCCCGCACCCTAGGGAGGGGTTCCAACCCCCTAGAGAAGGCTTTCAACCCCCCAGGCCAAGGTTCCCACCTTCAGGACCCATGGAGGGGGAGAACTGGGACCATGGCCCTTTGATGAATGACTGGCATGACAATGGGCCCAACAGGGGTCCAGAATGGTTTGGAGAGGAGCCTCCCTTCAGACGTGGAGGGTGGGGCCGAGGTGGCCCAAGGGGACGAGGCCATTTCTGAACCTGAGATTTAAAGCTGGGTGTTCTTAAAGAACTGAAAGAAGTTTGAAAGATTGGCCTCACTAACTATTAAGACTTTTGTTGCTACGGACAAACGTGGACTTCTGAGGTTACGTGTGCCAATAAACATGAGCCCCAATGGTCAGGCTGTTTCAGGAGTGAGTGAACTTTGAGTGTGTGCGCAAGACTGTTAAAAGGTCATCTCTACTGAAGTAAAGGGCGAATTGTACTTCTATGTCGAGTCAAGGCAGAGTCTACAGTGCAAGTGACACACGCCAATGTGGGCATTTATACTTGTGCGCTGGTGTGTCTGCAGTTCTTTGCGGTTACtccattaaaacagtaatgtaAAGGCGGGAATATGATGCTtagtggaccaatcacagttgcTAAGATCTCCAGCACTGTGACAGCAACAGGCTATGCCATAGGCTACAGCATAGATTCAGTGCATTAAATTCTGCACAGAAGCATAAATCAGCCTTAAGTGTGGCATTGTGAGGTCATTTTGGAATAGCGCCCTTTCAGAAGACTGCTTTGGGAGGTGACCTTTAATCCCCAATAGAACGTTTTAATTGGGCCTGAAATTAGGCAAAGTTACTATTGAAACAATTCTGAGGTCACGTGTGTCAGCGAATGTGACTTGAGGTCGCAAAGACATTTAGCCAattcttttaaaacttttcaaAACTACAAGACTGTCATTTCTATCAAACTTAGGATGTCGTTCTCAGGTCACATGTGCTCAATAAACATGACTGGACCTAAACGGACATGTTtaagtccccccccccccccccccccccccccccccacagacTGTAGACTTTGGGTCTCTGTGAACTCTACAAGGCTATAGAAATGTCACTGCTGTTAAAATAAGTAGGCCATTCTGTGATCACGTGGGCCAACAACATGTCCAGGTGGAAAGATCTGCCCGCTGGGGAAGGTGATTTTAAATCCCCAAAGACTGTTTCTAAGGTTTGGGCTCCAGCTTGAATCCAGTGAAGACGAATGGGTTGCAGTAGAAATGTCATTGCCTTGGTAATATATGCGTGATCCTGGAGTCACGTGAGTCCGTTACCAGAGTTTTCTTCGTGTTTGAAGAATCCAGCAGGCTGTTGACTTCAAGTGTAATttagtttaagttttaagaCTGTAGAAACCTTTTTTCCATTCTAGGGTATCGTGTGGCTGTACACATGAATGGGCCTCAGGGCTACtttctgtaaaaatatttttcatgttGAAATAAATGGAGTATTTCAAGG

Function

NR:

description
PREDICTED: splicing factor, arginine/serine-rich 15-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231017.3 True 4560 mRNA 0.51 18 19068463 19101318
XM_007231018.3 False 4550 mRNA 0.51 18 19068467 19101318

Neighbor

gene id symbol gene type direction distance location
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding upstream 138643 18905646 ~ 18929820 (+)
fat3 fat3,fat3a,LOC107564369 coding upstream 197644 18666879 ~ 18870819 (+)
LOC103035466 NA coding upstream 569332 18487006 ~ 18499131 (+)
trnag-ucc NA coding upstream 664687 18403705 ~ 18403776 (+)
trnaw-cca NA coding upstream 667338 18401054 ~ 18401125 (+)
LOC111192961 NA coding downstream 739901 19841219 ~ 19841977 (+)
psmd2 psmd2 coding downstream 1419896 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 1436402 20537720 ~ 20545404 (+)
LOC103036360 NA coding downstream 1444222 20545540 ~ 20548431 (+)
LOC111192413 NA coding downstream 1454141 20555459 ~ 20557658 (+)
G4751 NA non-coding upstream 24090 19041392 ~ 19044373 (+)
G4746 NA non-coding upstream 63947 19003275 ~ 19004516 (+)
G4742 NA non-coding upstream 77515 18990429 ~ 18990948 (+)
G4717 NA non-coding upstream 125065 18941227 ~ 18943398 (+)
G4719 NA non-coding upstream 178252 18889993 ~ 18890211 (+)
G4753 NA non-coding downstream 290 19101608 ~ 19102049 (+)
G4761 NA non-coding downstream 3451 19104769 ~ 19152047 (+)
G4809 NA non-coding downstream 177453 19278771 ~ 19279016 (+)
G4853 NA non-coding downstream 538058 19639376 ~ 19648833 (+)
G4892 LOC107374453 non-coding downstream 632203 19733521 ~ 19735640 (+)
G4612 NA other upstream 308605 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 646107 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 994800 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 1056360 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 2445394 16619046 ~ 16623069 (+)
G4775 LOC108411134 other downstream 59413 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 1447873 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 1457205 20558523 ~ 20582874 (+)
G5026 NA other downstream 1882389 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 2955204 22056522 ~ 22154926 (+)

Expression


Co-expression Network