G4746


Basic Information

Item Value
gene id G4746
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 19003275 ~ 19004516 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6370
GGTTCAAATCCCATGGCTGCTATAGGAGAGTAACCTTCAGCTATTCTGCACATAATTGCCAATATTTGAATATTAGTTGAAAATATCAGACAGGAGGTTGTGAGGTCAAATCCCAATAATCGATACACTATCAGCATTTTATTGCAAAATTTTCACTGATAATAATGAAACTGTTGTTGATCGATACTGTGGCAAAAACATGGGTTCTTAATGGTCACTGCTCACAGTTGATTACAGCGGTAATCAGtagaccaggggtcggcaattatgTTATATTAAGTATGTGGCAGGCgaccaaaaaaactgttttgtaaaattaagtgtaatgggatggattgtgacagactagtagctctccagcccagagggttgttgaacccaattgcagaacagttgatctcaaagcagttaaacccaagaagaaagaaaaaaacaaataaataaacacaccgctcctcacgcagttgtcagggtcgcggtccaatacactaccactgccccggctagtgaattgggacacagccgtgaaaaaaaacaaacgcccttataagaagatagggagcccaagaaaaggcggaaactaaagttaAGCAGAGCGCAGCAGAAAGACTGGGGAGGCATGTAAACAAAAgttcaccagagaagcattttatatatattttttttccacattatgTTTCATGCTACGCCTATTGCCCAACCCTGGCGTAGACCGTGAATTTAAATCTCTAAAATGGCCCAAAACCAAAGCTATCCTTTGTCAATTAGTGTAAATATTGCACAGATATTTATAAAACTACAGGTTTTCAATATTAACGGATCTTATAAGCTAGCTGACATATCGGTCAAGCTCTGGTGTGTGAAGGTACAGAGAAAAATACACATCATTCAGGAACAAATACTCATTCTCACACTCTGTAGAGGTGTTCTATCATTTCCCATGGACACAAATGTGCAGCCTTATAGTCTACTCAGCCTtcatcactcacacacacacacatatatacacacacacacacacacaaacagggcGATTGCAGTGTGTGCcaaaagaatgaaaaagaagatgaactataaaaaaaaaaaatcttcaaaaataaCTTTCCCAAAACCGTGATTGCCCTCAGatctacacacactctgaggAAAAGATGGGTGTGCGCgaatgtgagagtgagagagaatatgaacgctgtgtgtgtgtgtaaaagtttgCAGTAAAACACAAACTGTGCCATATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6370 True 1242 lncRNA 0.40 1 19003275 19004516

Neighbor

gene id symbol gene type direction distance location
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding upstream 73455 18905646 ~ 18929820 (+)
fat3 fat3,fat3a,LOC107564369 coding upstream 132456 18666879 ~ 18870819 (+)
LOC103035466 NA coding upstream 504144 18487006 ~ 18499131 (+)
trnag-ucc NA coding upstream 599499 18403705 ~ 18403776 (+)
trnaw-cca NA coding upstream 602150 18401054 ~ 18401125 (+)
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding downstream 63947 19068463 ~ 19101318 (+)
LOC111192961 NA coding downstream 836703 19841219 ~ 19841977 (+)
psmd2 psmd2 coding downstream 1516698 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 1533204 20537720 ~ 20545404 (+)
LOC103036360 NA coding downstream 1541024 20545540 ~ 20548431 (+)
G4742 NA non-coding upstream 12327 18990429 ~ 18990948 (+)
G4717 NA non-coding upstream 59877 18941227 ~ 18943398 (+)
G4719 NA non-coding upstream 113064 18889993 ~ 18890211 (+)
G4617 NA non-coding upstream 126376 18876110 ~ 18876899 (+)
G4600 NA non-coding upstream 127805 18839966 ~ 18875470 (+)
G4751 NA non-coding downstream 36876 19041392 ~ 19044373 (+)
G4753 NA non-coding downstream 97092 19101608 ~ 19102049 (+)
G4761 NA non-coding downstream 100253 19104769 ~ 19152047 (+)
G4809 NA non-coding downstream 274255 19278771 ~ 19279016 (+)
G4853 NA non-coding downstream 634860 19639376 ~ 19648833 (+)
G4612 NA other upstream 243417 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 580919 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 929612 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 991172 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 2380206 16619046 ~ 16623069 (+)
G4775 LOC108411134 other downstream 156215 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 1544675 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 1554007 20558523 ~ 20582874 (+)
G5026 NA other downstream 1979191 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 3052006 22056522 ~ 22154926 (+)

Expression


Co-expression Network