G4949


Basic Information

Item Value
gene id G4949
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 20452126 ~ 20454493 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6623
cacggtggcttagtggttagcacgttcgcctcccagcactggggtcttgggttcaagtccctatctgggtggagtttccatgttctcctcgtgtctgtgtgggtttcctccggggactccggtttcctcccacagtccaaaaacatggagatcaggtaaattggatactctaaattgtccagaaaagtgtaatactctaaattgttCCGGTGTGTaggtgtaaagtgtgtggtatgtatgtaagtttgtgtgtgtaaatgtgcccagatatggattggcactctgtcctgggtaattgctgtagtgcccggtgcagtcctccaggtggacggtcgtttccggttgagagaaGGCTGGTGCTatcgtccttgggtttctagaaaggcgctataaaagttgaaattcattcattcattcattcattcattcaaaaaCAAAATGGCTGTCACACTTCCCTGTTTCCTGTTGTTAAGTAGGGATTACATTCAAAATAAGAGTCAccc

Function

GO:

id name namespace
GO:0000151 ubiquitin ligase complex cellular_component
GO:1990234 transferase complex cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
TU6623 True 503 lncRNA 0.43 2 20452126 20454493

Neighbor

gene id symbol gene type direction distance location
LOC111192961 NA coding upstream 610149 19841219 ~ 19841977 (+)
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding upstream 1350808 19068463 ~ 19101318 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding upstream 1522306 18905646 ~ 18929820 (+)
fat3 fat3,fat3a,LOC107564369 coding upstream 1581307 18666879 ~ 18870819 (+)
LOC103035466 NA coding upstream 1952995 18487006 ~ 18499131 (+)
psmd2 psmd2 coding downstream 66721 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 83227 20537720 ~ 20545404 (+)
LOC103036360 NA coding downstream 91047 20545540 ~ 20548431 (+)
LOC111192413 NA coding downstream 100966 20555459 ~ 20557658 (+)
LOC111192969 NA coding downstream 116909 20571402 ~ 20575427 (+)
G4940 NA non-coding upstream 66871 20384764 ~ 20385255 (+)
LOC111192871 NA non-coding upstream 71831 20379244 ~ 20380295 (+)
G4932 NA non-coding upstream 147201 20304689 ~ 20304925 (+)
G4930 NA non-coding upstream 149697 20301862 ~ 20302429 (+)
G4919 NA non-coding upstream 255073 20196843 ~ 20197053 (+)
G4951 NA non-coding downstream 31332 20485825 ~ 20486165 (+)
G4994 NA non-coding downstream 249267 20703760 ~ 20704500 (+)
G5003 NA non-coding downstream 302682 20757175 ~ 20762971 (+)
G5012 NA non-coding downstream 428318 20882811 ~ 20883093 (+)
G5028 NA non-coding downstream 527750 20982243 ~ 20982748 (+)
G4775 LOC108411134 other upstream 1286495 19160731 ~ 19165631 (+)
G4612 NA other upstream 1692268 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 2029770 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 2378463 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 2440023 18010178 ~ 18012103 (+)
LOC107197594 NA other downstream 94698 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 104030 20558523 ~ 20582874 (+)
G5026 NA other downstream 529214 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 1602029 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 1953063 22407556 ~ 22524746 (+)

Expression


Co-expression Network