G4591


Basic Information

Item Value
gene id G4591
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18314554 ~ 18328007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6168
cactcactctcacacacacacactcacacacacgcacacacagttCAGCCGATTTATCATAATGTGCTTTATCTGAAAAGTAAGTATCTTACCTCGGGATAAAGAGAGGAAAAAGCGGTTTGGGTTCAGATTGACAGCAGAGGACGGGGTAGACAGAGCGAGGCAGAGAGGGAGatacggagagagagaaaaaagagagagaattaaagGAATAAAAGGGGAAAGAACTGAATGGAATAATGTTTGGAGATGTTGGTGAACTTCTGGAGGGCCATGGTCGACCCCAGGACGAGGCAGGTGCAAGTTTAGTGAGGGGGGACACTTTTTGACTGTGGTGAGATCTGGACATGACACTGGTCGGCTCAGGCCTGGTCCGGACGGACAGAGGAACGTATGGATGTAGAGTGAACAGCAGGGCTGGACAGTGGAGATGTTCTCCAGATGAATGGAGGTCTGAGCAGCTGAACCAGGGCatgaataaaaacacagcactgAATCCAGAGAACTGCAAGGtttaaataagtttattaaaacactcacaaacaaacaaactgcaaCAAATTCATGTACACAGACAACACTAtccaaaaaacagatttatttttgtcaATTAGAATATACATCAAATGCATTGATTAAAATACCTGAATCATTTCAAAAATACATGATACAATACATTGTGTTACACTTCTGAATGATCGGCTACAGCTAATAGTCCAAATTATACGAAAGGTttcgatattttttttttaaatacactgcaAATTTGCACATAACTGCTATAGTTCTTTGAttacatgtatttaatatattgtaattggCATTATACACCTACAATTCTGTTTGTGCATGTTTttgtaaacatgtaaaataatTGTTCCATATACACATCAACATGCATgactttttatactgtttttttttaactaaaacacaaatctagcacatttattttctattttttttgtaatgccattatttttttctgtctttgtatgtgtttataatCATGTACAGTCATTGTggcatacacacatacatgtgtTATTATTACATATGCCATGGCATTTTGACAAATTTGActcaaatataattaaatacatttttaattgagcACTTccaacaataacaaaaacaaccctatagtaaattaaatgtaatattaaatgtGATTTGATTAGACTAGATATGTCATTCTTGAagacactttaaataatatacaatagtAAAGACAATAACTGATTTGATGgttgatatatggttatttgttTGAAGGGCTAAgtgttattctgtttattattgtatCAAATGCACCAAATGCATTAAATTTGCTTTAAtcttctgtattcatttatatataaacaattaCAAACATAGACACAACAGTATACACAAGTAAAAAGTCAAACTTTGGatcaagcatgttttttttaacaatttcagtttattaatgcaaaaaaaaaaaaaaaacccaaaaaaaacacttttcatttattttgtgaaatacaatgtaaatatgGGATAGCTGAAAACTGataatatcaataaaatacattactttTCAATTGTATGTGAGTTTTAACAAACtttgtatgtttaatatttttgtacatgTTAAATGTAATCCTATATCTGTTAGAGTGTTGATAGTAAAagctgtagagtgtgtgtaaagctgtaagagtgtgtaacATTACAGTAATAGGATAGTGTagtagtggtggtagtagtagtgtgGAAGGATATAAAGTCTTACACCACAGCTAATAACACCCTGTAGCACACAACTCTCTCATTTCAATACATTTCACACTTATACTCTTAATGCTGTGTGTTTGCAAGGTAAGTAAATGTATGTAAAGTCTTGTAAAGTCTTcataagacattaataaacaatattaagaaaataaaatataaaccctTTTGAAATGTGAAT

Function

GO:

id name namespace
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0098552 side of membrane cellular_component
GO:0098562 cytoplasmic side of membrane cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0009898 cytoplasmic side of plasma membrane cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:1905360 GTPase complex cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU6168 True 1936 lncRNA 0.41 2 18314554 18328007

Neighbor

gene id symbol gene type direction distance location
LOC103033229 psa6,LOC103033229,LOC106612618,LOC105026880,LOC106580837 coding upstream 33525 18274825 ~ 18281029 (+)
LOC103032687 gmfg,LOC103032687,LOC108277844,LOC107757325,LOC107679065,LOC107090391 coding upstream 58211 18250923 ~ 18256343 (+)
sidt2 sidt2 coding upstream 147877 18138024 ~ 18166677 (+)
LOC103030597 LOC108412477 coding upstream 182601 18124694 ~ 18131953 (+)
LOC111192370 NA coding upstream 292165 18017759 ~ 18022389 (+)
LOC103036794 map4k1,LOC108443018,LOC107757316,LOC107679433,LOC101883459,LOC104956018 coding downstream 4332 18332339 ~ 18386319 (+)
LOC103034176 LOC108443019,LOC107663551,LOC107572208,LOC107557657,LOC107679443,LOC108277854 coding downstream 61421 18389428 ~ 18400138 (+)
trnaw-cca NA coding downstream 73047 18401054 ~ 18401125 (+)
trnag-ucc NA coding downstream 75698 18403705 ~ 18403776 (+)
LOC103035466 NA coding downstream 158999 18487006 ~ 18499131 (+)
G4582 paf1 non-coding upstream 8302 18258571 ~ 18306252 (+)
G4587 NA non-coding upstream 8405 18305358 ~ 18306149 (+)
G4589 crx,LOC108443020,LOC107395012,LOC106935423,LOC106914190,LOC103155943,LOC107094494 non-coding upstream 12406 18298516 ~ 18302148 (+)
G4542 NA non-coding upstream 33941 18212156 ~ 18280613 (+)
G4563 NA non-coding upstream 136471 18177608 ~ 18178083 (+)
G4608 NA non-coding downstream 388954 18716961 ~ 18717640 (+)
G4611 NA non-coding downstream 428753 18756760 ~ 18758132 (+)
G4601 NA non-coding downstream 449996 18778003 ~ 18778514 (+)
G4614 NA non-coding downstream 478517 18806524 ~ 18806901 (+)
G4600 NA non-coding downstream 511959 18839966 ~ 18875470 (+)
G4550 sik3 other upstream 240891 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 302451 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 1691485 16619046 ~ 16623069 (+)
G4221 NA other upstream 1768700 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 2488451 15781638 ~ 15826103 (+)
G4612 NA other downstream 431368 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 832724 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 2221184 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 2230516 20558523 ~ 20582874 (+)
G5026 NA other downstream 2655700 20983707 ~ 20999200 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location