LOC103030646


Basic Information

Item Value
gene id LOC103030646
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16542948 ~ 16547740 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668975.1
TTCGTCTCTTAGTTGTGGTTAAACCTGTGGTGAGTTCTTGACGATTCTCATGTCACTCGGGTTTTTCTTCGATGAAAAGGTTCAGCAGGCTGAGATGAGTTTACAGCTAATGCACACGCACAACATTTCCTCAGAAAAACACTCGACTGCTTCTTATTTACTTTTTCCTGACACACTGACTGACAGCTGGTGCATCTTGCTGGTGTAATATACTGCAGGTCAAAGTGTGGAACCATGCTTGGGCTTCTGAGTGTGGTAATGACCCtcacagcagcagctggagctTGTATTAAGTCATGCAAGTGTGTGGACAATGCGACCATCATCACTTGCTCAAACAAGAACCTTTTGGAGTTTCCTCAACTTCCACCAGGCACAAAGAACCTCTATGTGACCCACAACTTGATCCGAGCTCTACCCAGAGAAGGTCTGGAGGAACTTCTGGTCCTTGATCTCACCAACAACCGGCTCAGTGAATGGCTCACTGGTACCACCACCTTACCAAATATGAGTAGCCTTACAGAACTGTTTTTAAGAGGAAATGGAATTAGCAGTTTGAAAACTGGAAAATTTCAGGAACTGACTAATCTCACCCTATTAGATCTCAGTGAAAACAACATTAAGATTCTTCCTCAGAAGTTCCTTCAAGGTTTGACCAACCTTAAGATCCTCGTTTTGAGCTTGAATGAGATACTCAGCCTTTCATATGGTGCATTTGAGGGAGGATCTGATCTTGAGGAGATCCACCTGAACAAGAATCATATAAAGATAATAGAAAAGGGTGTTTTTGAGAACTGCACATATCTAAACAAACTCGTCCTGTCCAACAACAACTTGAGCAGTGTAGAGGAAGGGACCTTCCTAGGCCTACATGGCCTGCGTCATCTGGATCTCAGTAAAAACAGGCTCAGCACTGTGCCCACTGGCACCCTCAAAGATACCCCCAATCTCACCAGCCTCTATCTACATCAAAATGGGATCACCCGTGTTCCGGAAAATGCTTTCTACAGCCTGTCTTCATTACAAATGTTGAATCTGAACAACAACCCTCTTAAAGTTATACATGCGGCCGCCTTACGAGGTCTTCGTAAGCTTCATGATTTAGATTTGAGCTCCAGTAAATTGCAGGTTTTACCACCATCAGTGTTTCAAGACGTAGGCAAACTAAAGCACCTCTGTCTATTCGACATTGCCTTGACATCCCTCCCTCAAGGCCTGTTCAACAATTTAACCTTGTTGCAAGAACTGCAGCTTGACAAAAACAAGATTCATATCATCCCACCAGATCTATTTCATCCACTTTCAAAGCTTAAGCATCTACATATGGACAGTAATTTAATCTCAGAGCTGAATTCATCAACATTTAGAACACTGAGAAGGCTAGTTCACATCGATCTTAGCAATAACCAACTGACAAACATTTCTAGTGGCCTTTTCAAGGGTACACGGAAACTAGCTCACCTTGATCTCAGTAAAAATATGCTCACAGCTGTACCCACGGAAGCCTTTAAGGAGATACCCCGCCTCAACCGCCTTTTCTTGCAGAAAAACGCTATCAGCTCTGTTCCTGAAAATGCATTCTCTGGGCTAGCTGGCCTGAAGAAACTGGACTTGAGCAACAATCCCCTTGAAATCCTAGATGAAGATTCTTTGAGGGGTCTCTTCATGCTTGCTGAACTAGACTTAAGTTTCAACCAGTTGCAAGATCTACCCTCATGTGTCTTTCAGGACCTAGGTAAACTTAAGAACCTTAATTTGTACAACAATGAACTGGACACAATTCCTGAACGCCTGTTCAACAATTTAACCCAATTAAAAGTGTTGCAGCTAGATAGCAATAATATTTCTGTTATCTTCCCAGAAACATTTAATCCGCTTACAGAACTTAGGGATTTACAATTGGACAACAACAACATCTTACAGCTCAAtgcatctttatttaaaaatcttaaacatcTGCATAGCCTTTACTTAAATAACAATGCTCTTTCCAGAATTCCCAAGTACCTTTTCCAAACAACACGGCACCTCAAAGAGCTGCAACTGACGAATAATCATATCCACAATATACCAAAACTGTCCTTCAAAAGCCTTAAGATGCTTAGAGCTCTTAGACTCAATGATAATCACCTTTCCGATCTCCACAAAGAACTCCTGGCTGGTCTTGATGACCTACGGGAACTGTCACTGAACCGAAACCGAATAGAAAGCCTCCCAGTTGAATTTTTCACACTTCCGAACTTGAGAACACTTGACTTGTCAAACAATAATTTGAACACCTTGTCCTCTGAGGATTTTAAACACCTCACCACACTGAGAGAAATACACCTGAGTTTCAATAAGCTCAAGGCATTACCACACAGCATATTCAGCTCTCAGGGAAACCTTCAGAAACTCTTCCTGCAGAACAACTATCTATCCCATCTGCCCCTGAATGTGTTCTACAAACTGAACTCCTTGAAACAGCTTGATCTGGAGAATAACCACCTCCACCATCTAGCCAACAAACAATTCCACAGCCTGAAGAACCTGGAACAACTACATCTCAAATCCAACAGACTGCGATCACTTAGTAACGGGACTTTTGAGGCTTTGACATCCCTGAGAGCCATATATCTCAGTGAAAACCCGTGGGACTGTTTCAATGTGTCTAGCATGTATGTGAGAAGATGGATCAGTAAGAATATCCATTTGGTGAAGGATAACCCAAAATGCTCGGCCACCTCTGGATGCCTTGCTAATCGAGACCTCAAGAAGTCTTTCTTGTCACCTCTGCGCTGTGGCAGCGTTGCCTGTTTCTTTATATGTACGCCACAAATGCAAATTCTAACAATTATTATAATCTCTATCTTGAATGCTTATGTGTTGTGAGGTTGCTCTGCTGCAGCCGTGATTTGTGTTTGCTCAGTGCTGTAGCGCATTGCTTCTCTTCTTCAGAATAGGCCTTTACACATAATACAGCACCTATGTTTTTATTTCGTTTTAAATTGATGAGTGAGAGTGTTTGATGTGCCAGGCAGATGTCACATAGTGCATGAATTACAGAAAATGTTAGTGCATATATTCTTAGACGTGTGATTTTTCTTGTAGTATTTAGAAAACAGGAGTATGAATTGTATTGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668975.1 True 3125 mRNA 0.42 2 16542948 16547740

Neighbor

gene id symbol gene type direction distance location
LOC103047885 NA coding downstream 91946 16439618 ~ 16451002 (-)
plekhg2 NA coding downstream 130349 16339721 ~ 16412599 (-)
supt5h supt5h,LOC107586261,LOC107657557 coding downstream 232299 16291524 ~ 16310649 (-)
LOC103025059 tnfaip1,LOC108425816,LOC108277497,LOC107586309,LOC107728221,LOC107597551,LOC107657549,LOC107729096,LOC107662792 coding downstream 384287 16148608 ~ 16158661 (-)
sgsm2 sgsm2,LOC108277483,LOC107728220,LOC107729122 coding downstream 400040 16076499 ~ 16142908 (-)
LOC103044128 ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 coding upstream 71371 16619111 ~ 16622984 (-)
LOC103043199 NA coding upstream 108495 16656235 ~ 16658680 (-)
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding upstream 126361 16674101 ~ 16686184 (-)
LOC103041159 NA coding upstream 1335036 17882776 ~ 17914128 (-)
mpzl3 NA coding upstream 1397334 17945074 ~ 17975882 (-)
G4245 NA non-coding downstream 5008 16537731 ~ 16537940 (-)
G4215 NA non-coding downstream 62298 16480335 ~ 16480650 (-)
G4197 NA non-coding downstream 230278 16312358 ~ 16312670 (-)
G4196 NA non-coding downstream 253222 16288143 ~ 16289726 (-)
G4192 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 non-coding downstream 266209 16271630 ~ 16276739 (-)
G4252 NA non-coding upstream 13780 16561520 ~ 16562762 (-)
G4253 NA non-coding upstream 31742 16579482 ~ 16579867 (-)
G4254 mark4,LOC106612588,LOC106580867 non-coding upstream 49848 16597588 ~ 16597900 (-)
G4255 NA non-coding upstream 53138 16600878 ~ 16601102 (-)
G4256 NA non-coding upstream 54161 16601901 ~ 16602113 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 260316 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 2071196 14380755 ~ 14471752 (-)
G3612 NA other downstream 2258723 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 2409711 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 2970576 13544500 ~ 13572372 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 96752 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 1436145 17983885 ~ 17998749 (-)
G4621 NA other upstream 1482622 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 1648840 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 3091625 19639365 ~ 19648822 (-)

Expression


Co-expression Network