LOC111192362


Basic Information

Item Value
gene id LOC111192362
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1493166 ~ 1496427 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669078.1
TTGAGTAATTTAATCTGGACACTACTGGGTTTATTTTAGAAGCACTAGAAGTAAATACTTGCTTGAAAAAAGCGTTTTTTTATTGcgttttttacttatttatttattttgacgaATCAGCGCCAGCAATGATGTCATGAGATTTACCACAGACCGCAGTAAACATCATTGATTATGGTGTTTTAAGACAATAAATGGTGTTATAATGAAAGAATAAAGCATGTAAATATGAAGGTAAACCTATTCTTTAGGTATATTtctcaaaaacacttcagttcagCGTGAGGTCGGTGCTATTTTAAGAAACAATAGGGTTCCCTGTTTTTCACAATGTATGAATCAAGTTGATGTGTTGACACAATCCTGAGTAATTAGGCTGTATAAACAATGCCGATTTTTGATGCAATTTGCGTCAatggggttctaagggttaagaaTAAATTGAATTTTGTGTCAAAATCTGTATTTAACTCACATAGTTGGTGAGGTGTGTTTAATGTAATTATGTTAACAATCACACATTTTATACTATATATCAATCTGATTGCTGCCTTTTTCctctgttactgttttttttctgattttctgcttTACACTGTTGCACTGCATTACCAGCATTAGCCAGTGCTGGACATAAAACTCATGTTACGTCAACGTGGTGCTAAAACTGTCCTTACATTGCTGTAATGTTATGCTAACACTGTGCTAACATTGCTGTAATGTTATGTGAGCATTATGTtaacatttcatatttaaacacattgtACTGAGCGAGTCTCTGCTTCATAACTTGTGACATCACCACCGGAACTTTAGCTAGGATTCCGTGGTGACATCACCAGCCCACAGCATATAAGCACTCGTCCCTCAGTATTCAAATCAGAGGGTGTGTTTACTATTATTCTAGCAGCACATCAGCGCCTTTTCTCTGAGATGGATTTCGCAAGAGAGGAGAAGTTTATTTTTCCGAAAATTGCGCCCTGGGTCCACGACCTTCCACTAATGAGGCGCAAGACTAGAGGTGAGCCGTGGTATCTCCACGTGCCCCTCCCACCACCAGCAAAACCTGCTGTCAGAAACACCGGCACCAGGTTTCCCCCAATCAAAGGGCTGGAACAAGAATGGAGCGGGGTCTTAGGGGACTCCTCCTTTGGAGAGTTCACCTCAAGGCCCCTCCATTACCATCCAACTCCTCCACCAACTCCTCCGCCTGTCACTGCTACCCTGCCGCCAGTGGTGGTGAATAAGCCCCCGGCCTACAATTCACCAGGTAGCAGGATACCTATTCTAGACAGGCGGAGGAAGCTGAGGCCGGTCCAAGCTGTGGTGCAGCCCGTTAACAATATGGCCGCCCACAGCATAATAATGGACAAACCAGCACAGGTGGAGAGAGCAGTCAGGAAGAAGCCCAGTAAGATCAGGGCAGCTCCTCAGGCCATTGGGAAAGGTCAGGGACTGGAGCAGCCACTGGTGCCACCATCCCTGACCAGTGAAGATGCCCTCAACAGGCCTGAGGACGCTCTCGGCCAGGCACTAGGTCTGCTGCAGGATGAGGAATGGGAGAGGAAGATCGAGGGACTGAGGCTTGTGCGAGCTCTGGCTGAACATCACTCTGAGGTGGTGCTGCCAGAGCTCCACTACGTCTGCAAAGCAGTCATTGCGGAGGTGAAAAACCTCCGCTCTATTGTCTCTCGGGACGCCATCACCACAATGGCGCACCTTTTCACTCACCTGCAGCACAACATGGACAGTGAGGTCGAGGGCGCTGCTCACACCCTCCTTCATAAGGCTGGGGAAACCAGCCTTTTTATAAGGCAGGGTGTGGAGCTAGCCCTCAGCGCTATGGTGCACCACTGTTCGCCTGGCCGAGTCCTGCGAGGACTGCTGGATGGTGGATTcagACACAGAAACCGGGTCTCCAGGGCCGCCACTGCATTGAGCCTGGTGAGGCTCCTGCAGGTGGTTGGAGTTTCTCGTGTGCTGATTGGCAGGAAGAATTTAGCGAGTGAATTCGTTCCTGCCGTCAGCACACTGGCGTTTGATGCAGACCAGGACGTCCGGGCCCATGCTCGAGCCGCACTGCGGTACCTGGGCAGCCACAAGGACGCAGAAAGGGCTGTGGAGAAAATTTGTCCAATTAAGTGACCAATCACAAGTGAAGAAGTTGCttcacaattaattaattaattaataattgtttaatttattgtctgtagttgagatgttgttcagtgttcagctGTTCAGACTGGGTTTGGTGTTGAACGCTCTGTTCTAGAGAAGTTTACAGACTCAGAGCTGTTCACAGTGGTGGAGAACAGGAACTACATCTGAAGAGGTGGATGAGGCAGCGGCTCCACCTTCCTCTCGCCAGAGGGAGGCGGGGTCTCTGCTTGGTGGGAAACGCGCCGGCCCCGTGGCATCAGGGCTTCCCAGTCAACCAGCTGGGAATGTCCCGCCCCCAAACAAGCCTGCAAAGCTTGTGAGGGGTTCGCCCAGGGCCGGCCGGCGTCCCCCAGTCCACCCTTCAGACGTACGGGTCCCGTCTCCATCACTGTGATCAGCTCTGACTCTGTCGGCTTCTCTGGAACAaagcatttcacaccaaacccacTCTGAACACCTGAACACCAAATAACATCTCAACCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669078.1 True 2650 mRNA 0.48 6 1493166 1496427

Neighbor

gene id symbol gene type direction distance location
LOC103021504 LOC103021504,LOC108442331 coding downstream 346784 1138245 ~ 1146382 (-)
LOC103043916 NA coding downstream 621187 864798 ~ 871979 (-)
LOC103025162 NA coding downstream 779185 708344 ~ 713981 (-)
pxylp1 pxylp1 coding downstream 967659 504270 ~ 525507 (-)
LOC103031067 NA coding downstream 1029332 448578 ~ 463834 (-)
rabggtb rabggtb,LOC107732517,LOC107584851,LOC107576861 coding upstream 211312 1707739 ~ 1717654 (-)
acadm acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding upstream 223385 1719812 ~ 1729386 (-)
best4 best4,LOC106569841,LOC108262062 coding upstream 267837 1764264 ~ 1772891 (-)
LOC103045337 NA coding upstream 286777 1783204 ~ 1792128 (-)
LOC103044599 glis1,LOC107602512,LOC106952155 coding upstream 300134 1796561 ~ 1833032 (-)
G474 NA non-coding downstream 1883 1489288 ~ 1491283 (-)
G425 NA non-coding downstream 46284 1446675 ~ 1446882 (-)
G393 NA non-coding downstream 313998 1178952 ~ 1179168 (-)
G358 NA non-coding downstream 427237 1065570 ~ 1065929 (-)
G357 NA non-coding downstream 428520 1064294 ~ 1064646 (-)
G476 ptbp1a,LOC107729315,LOC107584874,LOC108432475,LOC107602545,LOC107674042,LOC107688524,LOC107732511 non-coding upstream 14618 1511045 ~ 1522745 (-)
G496 hectd3 non-coding upstream 239967 1736394 ~ 1737917 (-)
G502 hectd3,LOC107729394 non-coding upstream 254755 1751182 ~ 1753854 (-)
G504 NA non-coding upstream 257952 1754379 ~ 1756314 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding upstream 261553 1757980 ~ 1763623 (-)
LOC111197534 NA other downstream 637006 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 822451 589669 ~ 670715 (-)
yipf1 yipf1 other upstream 368088 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 424053 1920480 ~ 1928255 (-)
znf414 NA other upstream 927286 2423713 ~ 2434401 (-)
G807 NA other upstream 1053789 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 1414327 2910754 ~ 2970340 (-)

Expression


Co-expression Network