LOC111192952


Basic Information

Item Value
gene id LOC111192952
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8939639 ~ 8940410 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671346.1
actttctacaccacacacttttaCCACACCTAGGTACATCTACACCAGAAGTATCTTCAACATCATCAACATGGTCAGTTCATCGGAGCAGGTTCTTCATCTCATCcgtgaagaggaggagaagaagaaacgGGGAGAGAAGAGGACCAGGTCTGAGCTGTTCCCTGAAGATCCTGCAGCTCATGAAGATCCAGCAGCTCCTGAAGATCCAGCAGCTCCTGAAGATCCAGCAGCTCCTGAAGATCCAGCAGCGAAGAGGAGGAAGACGCAGACCTCGACCACTGTTCGTGTTCTTACGCACAGGACGGTCGTCAGGAACGTGTTTTGTTCTCAGCTGCTGAGGTTGGTAGGAGAGTTCTTGTGCCGCCGTTGTCGACTCCTCACGGGTCTTCGTCCCACCGTTCCTCCGTTTTGGATTCAGAACGTGGACGTGTCGCTGACCGTGCTCGGAGCTCAGCAGCAGTCCTTCATCTGCTCAGTCACCGTGGCCTTTCTCTACATGCTGCTCCGTGACTCTGTCTCGGCGGAGGTGTCCAGCATGGAGGAGCTGCGGGCGGTGCTCCTCTCCTGCCTGTATGTATCGTACGCATACATCGGCCATGAGCTACACTATCCAGCACGGCCTTTCATCATGAAGACCGACAGGCAGACATTTTGGAAGCGAACTCTGGACATCGCCAAGCGCATGAGCGGGAAGATGCTCCACATCAACACCTCTCCAGATGTCTTCGCCAAGGTCATTTCTGACCTGAAGAACAAGACAGACCTTTAA

Function

GO:

id name namespace
GO:0045860 positive regulation of protein kinase activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671346.1 True 772 mRNA 0.53 1 8939639 8940410

Neighbor

gene id symbol gene type direction distance location
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding upstream 85438 8846840 ~ 8854201 (+)
LOC103022922 LOC103022922,LOC108277434 coding upstream 100260 8837372 ~ 8839379 (+)
LOC111194918 NA coding upstream 113279 8822490 ~ 8826360 (+)
LOC103023232 NA coding upstream 122952 8807167 ~ 8816687 (+)
LOC103027547 NA coding upstream 126419 8811248 ~ 8813220 (+)
LOC103038411 NA coding downstream 213979 9154389 ~ 9156240 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding downstream 467689 9408099 ~ 9463585 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding downstream 632110 9572520 ~ 9600832 (+)
LOC111192769 NA coding downstream 816426 9756836 ~ 9759186 (+)
LOC103041157 NA coding downstream 969142 9909552 ~ 9971315 (+)
G2400 nos2,LOC108432969 non-coding upstream 57047 8875852 ~ 8882592 (+)
G2393 NA non-coding upstream 76892 8857353 ~ 8862747 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding upstream 152629 8743016 ~ 8787010 (+)
G2328 NA non-coding upstream 308792 8629797 ~ 8630847 (+)
G2326 NA non-coding upstream 311728 8627648 ~ 8627911 (+)
G2443 NA non-coding downstream 233926 9174336 ~ 9174756 (+)
G2453 NA non-coding downstream 375274 9315684 ~ 9316134 (+)
LOC111195023 NA non-coding downstream 445858 9386268 ~ 9394588 (+)
G2464 NA non-coding downstream 458184 9398594 ~ 9399000 (+)
G2466 NA non-coding downstream 523686 9464096 ~ 9465472 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 204687 8732723 ~ 8734952 (+)
G2304 NA other upstream 379161 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2385189 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2524845 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 3236456 5681026 ~ 5703183 (+)
lyrm9 lyrm9,LOC102789908 other downstream 4051 8944461 ~ 8957392 (+)
G2509 NA other downstream 691455 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 693683 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 2318036 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 2347721 11288131 ~ 11288846 (+)

Expression


Co-expression Network