LOC103033918 (LOC108431152,LOC106599103,LOC106568909,LOC108278312)


Basic Information

Item Value
gene id LOC103033918
gene name LOC108431152,LOC106599103,LOC106568909,LOC108278312
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 3189007 ~ 3217021 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673821.1
ctcaaacaccctctcacacactcactcacagagCGAGCAGTGGAGGAATGGATGACCACGGCTACCTGCATGTGGgtTCCTCAGTGCATCTCGCCCATAATCACCTGAGACCCCCCCCTCCCAGCCCCCCATCGTCTCCATGATGACCCATCACCACCAGTCCGTCATCAGCAGCCTGGCATCCCCCTTCTCTGTCATCACTTCCTCCTCACTGAGCCCCTTGACCTCCCCCGTACCCAGCACCCCCAGCGGGGGCTACAGCCCATACAGCCCACAGATTCACTCTCTGAGCAGCTCAGACGACATGAAGCCTCTTCCCAGTCTGaccagcaggagcagcagcttCCAGTGCATCAGTCCAGGCTCCCTGTCCAAACACATCTGCTCCATCTGTGGAGATCGATCTTCAGGAAAGCACTATGGGGTGTTCAGCTGTGAGGGCTGTAAGGGCTTCTTTAAGAGAACAGTGCGTAAAGATCTGACGTACATGTGCCGGGACAGTAAAGAGTGTCTGATAGATAAACGGCAGAGGAACCGCTGTCAGTACTGCCGCTATCAGAAGTGTCTGGCCATGGGCATGAAGAGAGAAGctgtacAGGAGGAGAGGCAGCGGGGTCGAGAGAGGATGAGTGATAGTGAGGTTGACTCCAGCACTGGGTTAAATGAGGAGATGCCGGTGGAGAAGATTCTAGATGCTGAATTAGCCGTGGAGCCGAAAACAGAGACGTACCTGCCGTCCAACACAGGAAACTCACAGACCAATGACCCTGTCACCAACATCTGCCAGGCGGCTGATAAGCAGCTGTTCACTCTGGTAGAGTGGGCCAAACGCATCCCGCACTTCTCTCAGCTCCCTCTGGACGACCAGGTCATCCTCCTGCGAGCAGgcTGGAATGAGTTGCTGATTGCCTCGTTCTCTCATCGCTCTGTGACGGTGAAGGATGGTATTCTGCTGGCGACCGGTCTGCACGTGCACCGCAGCAGTGCCCACAGTGCAGGAGTGGGCTCCATCTTCGACAGGGTGCTGTCTGAGCTGGTGTCTAAAATGAAGGACATGCAGATGGATAAGACTGAGCTGGGATGCCTCCGAGCCATCGTCCTCTTTAACCCAGATGCAAAGGGTTTGTCCAGTCCGTCAGATGTGGAAGTGCTGAGGGAGAAGGTTTACGCCTCCTTAGAGTCCTACACTAAACACAGATACCCCCAGCAGCCTGGCAGGTTCGCTAAGCTCCTCCTGCGGCTTCCTGCTCTTCGCTCCATAGGCCTGAAGTGTCTCGAGCATCTGTTCTTCTTCAAGCTCATCGGAGACACGCCCATAGACACTTTCCTAATGGAGATGCTTGAAGCTCCGCACCAGATCACATGACCCACCCAACCCAAATTAACCCAACCTATGCCCCTATAAATAACCCCCTGTGCACAGAGTCACCCCAGCGTAACACACTCATCCTTCCTTtgtactaaaatgtaaaatacaaaatatatgtattgaTATTTCTAATCGATGTACTTATTGATGTACATATGTGTCAACCCACACCTTTGTAAAGTCATAACAGAGtggtatttttattacatatctGAGAAgataaacagtgttaaatgttaaGAGTATTAGATTTACTATAAATGCATTTCATTTTGGATATTTTTCCATGGTAGTGTTCGCTTTTCAAATTGGCAATAATTCCTCTCcatatttgattgcattcagaccTCCCCAAATCCTGGGCCATGCTTCTTGGATATTTCTCTGCTCTAGAGAGTCTTATTCTAATGGCAGTACTTGTTTTCTACAGGGTCTAGCCAATTTAAATCAGCAGTGGCTGTTTAAAGATAAAGTagcaaaatgcattaaattgaaagggtgtccacaaatatttggacttGTAATGTATTCTTAAGACACTACTGATGTACTTATGTAGTACTGGTGTACTGATGTACTGGTGTACTGATGTACTGATGTAGTACTGGTGTAACT

Function

NR:

description
PREDICTED: retinoic acid receptor RXR-gamma-A-like

GO:

id name namespace
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14030 NR2B4, usp; nuclear receptor subfamily 2 group B member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673821.1 True 1984 mRNA 0.49 10 3189007 3217021

Neighbor

gene id symbol gene type direction distance location
LOC111193343 prg4 coding downstream 9413 3163711 ~ 3179594 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding downstream 74238 3099846 ~ 3114769 (-)
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding downstream 152173 2986333 ~ 3036834 (-)
LOC103032964 LOC108444491,LOC107722586,LOC107718136,LOC107693739,LOC107589867 coding downstream 260941 2916789 ~ 2928066 (-)
fam129a NA coding downstream 296651 2835312 ~ 2892356 (-)
olfml2b olfml2b,LOC107718167 coding upstream 80792 3297813 ~ 3316021 (-)
LOC103033290 NA coding upstream 159589 3376610 ~ 3383122 (-)
LOC103028436 NA coding upstream 273851 3490872 ~ 3503293 (-)
LOC103032346 NA coding upstream 299603 3516624 ~ 3554189 (-)
LOC103032017 LOC108441573,LOC107693752 coding upstream 387165 3604186 ~ 3666404 (-)
G990 NA non-coding downstream 1025 3187503 ~ 3187982 (-)
G977 pdc,pdca,LOC108277616,LOC107693745,LOC107594646 non-coding downstream 39795 3092945 ~ 3149212 (-)
G963 NA non-coding downstream 127808 3060943 ~ 3061199 (-)
G958 NA non-coding downstream 139252 3049408 ~ 3049755 (-)
G952 NA non-coding downstream 188344 2995830 ~ 3000663 (-)
G1016 NA non-coding upstream 72484 3289505 ~ 3289918 (-)
G1017 NA non-coding upstream 77555 3294576 ~ 3294782 (-)
G1013 NA non-coding upstream 79219 3296240 ~ 3297646 (-)
G1211 NA non-coding upstream 151782 3368803 ~ 3373615 (-)
G1214 NA non-coding upstream 168352 3385373 ~ 3386231 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 218667 2910754 ~ 2970340 (-)
G807 NA other downstream 588496 2550216 ~ 2600511 (-)
znf414 NA other downstream 754606 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 1260752 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 1315880 1864515 ~ 1873127 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 177183 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 665349 3882370 ~ 3909671 (-)
G1308 NA other upstream 882744 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 1049980 4267001 ~ 4271970 (-)
LOC111193783 LOC108442858 other upstream 1059888 4276909 ~ 4321340 (-)

Expression


Co-expression Network