LOC103025735 (robo2,LOC107741616)


Basic Information

Item Value
gene id LOC103025735
gene name robo2,LOC107741616
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 7829843 ~ 8482228 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679934.1
tgtgtgtgtgagtgtgtgagagcgcGGAGTAGGCAGAGTAAGCTGCGCTGTGCCTTATGTTGCGCCTGCTACTCGCtggctcactctctctctcggatggtgatgatgatgatgatgatgaaggctGGTGCGATGGAGATGATGCTGTGAGAAGCGGCGGAGCTCGGTTCTCGCACTGAAGAGCCTGCTagaagctcacacacacacacacacacacacacacactctttctcacactctgtctggAGCGTGGCTGATGACAGAGCACCGATGACAGCGCCCAGCGCCTGGCCGAGCGCCTCCGCGGACAGGTGAAAGACCTCCCCCCGCCACAGCCCCAAACTCCTGGAGATGTTCCTCAGGAGCGGCCGTGGATTCCTCTCTCCGGCTCTgagactgctgctgctgctgctgctggtctcCGCTCCACAGCCCTCGCTCCAGGGCAGGAATAAGGGCAGATGGAACAAGGGGGGATCCCGTCTGCGGCAGGAGGACTCCCCGCCCCGCATCGTGGAGCACCCCTCCGACCTCATCGTGTCCAAGGGCGAGCCGGCCACCCTCAACTGCAAGGCCGAGGGGCGGCCCACGCCCACTGTGGAGTGGTACAAGGACGGAGAGAGGGTGGAGACGGACAAGGACGACTCGCGCTCCCACCGCATGCTGCTGCCCAGCGGCTCGCTCTTCTTCCTCAGGATAGTCCACGGGCGCCGCAGCAAACCGGACGAAGGGGCGTACGTCTGCGTGGCCCGAAACTACCTGGGAGAAGCCGTCAGTCGCAACGCCTCGCTGGAAGTAGCATtgctgcGGGATGACTTCAGACAGAATCCAACAGACGTGGTGGTTGCAGCAGGAGAGCCGGCCATTCTGGAGTGCGTCCCCCCTCGCGGCCATCCGGAGCCCACCATCTTCTGGAAAAAGGACAAAGTGCGGATCGATGAAAAGGAAGACAGGATCAAGATTCGGGGAGGAAAGCTGATGATTTCAAACACGAGGAAGAGTGATGCTGGGATGTACGTGTGTGTGGGCACCAACATGGTGGGAGAAAGGGATAGCGAGACAGCCCAGGTCACTGTTTTTGAGCGGCCCACGTTCCTGCGGAGGCCCATAAACCAGGTGGTGCTGGAGGATGAGGCGGTGGAGTTTCGCTGCCAGGTGCAGGGAGACCCTCAGCCGTCTGTCCGCTGGAGAAAGGATGACGTGGATGTCGCTCGAGGAAGgtaTGATATCCGGTATGACAAGGACGATTATGTTCTGCGGATAAAGAAGGCTTCAGCAGGTGATGAGGGGACGTTCACCTGTGTGGCGGAGAACCGAGTGGGCAAACTGGAGGCCTCGGCTACACTCACAGTGAGAGCTCGCCCCGTGGCACCACCCCAGTTTGTGATCCGGCCACGGGACCAGATTGTGGCTCAGGGGCGCACCGCCACCTTCCCCTGCGAGACCAAAGGGAACCCCCAGCCTGCAGTGTTCTGGCAGAAAGAGGGGAGCcagAACCTGCTGTTTCCCAACCAGCCGCAGCAGCCCAACAGCCGCTTCTCAGTGTCGCCCAGCGGAGATCTGACCATCACAGGGGTGCAGCGGGCAGACGCAGGCTACTACATCTGCCAGGCGCTGACTGTAGCCGGCAGCATCCTGGCCAAAGCCCAACTGGAGGTCACAGATGTGTTGACGGACAGACCTCCGCCCATCATTCGTCAGGGTCCGGCCAATCAGACGTTGGGCGTGGACGGTGTAGCTCTGCTGAAGTGCCAGGCATCCGGTGAGCCCGTGCCCACCATCAGCTGGCGCAAGGACGGAGTCAGTCTGCTGGGCAAAGACCCTCGCATGTCTCTGCTGGACCTGGGCAGCCTCCAGATCAAGAACATACGGCTCTCAGATTCTGGGATCTACACCTGTGTGGCTGCCAGCTCCAGTGGGGAAACGTCTTGGAGTGCTTTCCTGGAAGTGAAAGAATCTGCTGGGGTGGTGACGATTAAGAACCGAGATGAGAGTGAACTCCCAGGACCTCCCTCCAAACCTCAGGTCACAGACGTCACGAAGAACAGCGTGTCGCTGTCCTGGCAGCCCGGCCTGACCGGAGCATCGGTCACAACGTCTTATGTGATTGAAGCTTTCAGCCAATCAGTGAGTAACAGCTGGCAGACAGTGGCGGACCACGTTAAGACCACCCAGTACACCATTAAAAGTCTCCGGCCCAACACCATCTACCTGTTCATGGTGCGAGCTGTCAACGCGCAGGGCCTGAGTGACCCCAGTCCCATGTCGGAACCGGTCCGGACACAAGATATCAGTCCTCCAGCTCAGGGCGTGGATCACAGGCATGTCCAGAAGGAGCTGGGAGAGGTCATTGTTCGGCTACACAATCCCGTGGTCCTCAGCCCCACCACCATCCAGGTCACATGGACGGTGGATCGTCAGTCTCAGTTCATCCAGGGCTACAGGGTCGTGTACAGGCAGACATCAGGGCTGTCTTCTCCGGGGCCGTGGCAGAGCCAGGATGTCAAGGTTCCCTCTGAGAGGACCGTCGTTCTCTCCTCACTGAAGAAAGGCATCGTATACGAGTTCAAAGTGCGTCCATATTTCAATGAGTTCCAGGGCATGGACAGCGAGTCCAGGACAGCGAGGACCACTGAAGAGCCTCCCAGTGCTCCACCCCAACAAGTGACTGTCCTGACGGTGGGGAATCAGAACAGCACCTCTATCAGCATCTCATGGGACCCCCCTCCTGCAGACCACCAGAACGGCATCATTCAGGAGTACAAGaTCTGGTGTTTGGGAAATGAGAGCCGTTTCCATGTGAATAAAACGGTAGACGCAGCCATCCGTTCTGTGGTGGTTGGGGGTCTTCAGGCAGGGGTGCTTTACCGGGTGGAGGTGGCTGCTAGCACCAGTGCAGGAGTGGGCGTGAAGAGCGAGCCCCAGCCAATCGTCATTGgtaagGACTTCCGAGATGTGATTGTGAGTGGGAACAAGAATAACAGCATCACAGAGCAGATCACTGATGTGGTGAAGCAGCCGGCCTTCATTGCTGGGATCGGAGGTGCCTGCTGGGTCATCCTCATGGGCTTCAGCATCTGGCTCtactggaggaggaagaagaggaagggTCTCAGCAACTATGCAGtGACGTTCCAGCGTGTTGACGGAGGCTTGATGAGCAATGGAAGTCGGCCTGGTCTCCTCAGTGCTGGTGATGCAGGCTATCCTTGGCTGGCTGACTCCTGGCCGGCCACCAGCATGCCCGTCAACAGCAGCTCCGCAGGACCCAACGACCTCAGCAACTTCAGCGGCCGTGGAGATGTGATGCCCACCGCTCAGCCTGATAAAACAGGCACCATGCTGTCTGACGGAGCCATCTACAGCAGCATCGACTTCACCACTAAAGCGGGCTTCAGCAGCCCCAGCCCTGCCTCACAGGCCACGCCCTACGCCACCACGCAGATCCTCCACTCCAGCAGCATCCACGAGCTGGCCGTGGACCTGCCTGACGCCCAGTGGAAAACCTCACTGCAGGCCAAGCAGGAGATGGCCAACCTGGGCTACTCTCTGCCTGACAAAAACTCCTGCAACAACAGTGGGAAGggaggaaagaagaaaaagaccaAAGCAGGAGCCAAGCCCACCAAGGCCAATGGCTCCAACTGGGCAAATGTCCCTTTACCACCCCCTCCTATCCATCCTCTACCCGGCACAGAGCTGGACCACTACCCTACAGAGCACCATGAAGGAGGAGGCTATGAAAGTGACGGCTGGGGTCCTCCACTGCCCGTACAGACGTACCTGCACCAGGGCCTGGAGGATGAGctagaagaagaggaggagagggtgCCGACCCCACCCATCAGGGGCGTGGCCTCCTCCCCTGCAGCCGTATCCTTCGGAAAGCAGTCCACAGCCACGCTGACCCCGTCACCCCGAGAGGAGATACAGCCCATGCTGCAGGCCCATTTGGACGAGCTGACCCGGGCCTACCAGCTGGACATGGCTAAGCAAGCCTGGCACCTGCAGGGGGGCACGTATCCTCCTCAGGCACCCGCCCCTCCAGTGGGATACATGTCCAGCACCCTTGTCTCTGACATTGAGACAGACCTCCCGGATGACGATGATGACGATGAGGATGACCAGGAGGAAGATGAAGGCTATGAGATGTCTCCGCCCCTCCGGGGTATTGAACACACACCGGGCTCCAGCATGGACAACCTAGACAGCTCAGTTACAGGCTCCATGGTGAATGGTTGGGGTTCGGCGTCAGACGAGGACGACAGGCCCTTTTCCAGCCACAGGTCCAGTGCAGGTAGCTCCTCAGATGGCTCGCTCTTCACCCACTGCAGCTTTGCCCGGGCGCTGGCGGCGGCTGCAGACAAGGCCGGCTATAGGCTGGACGGCACCAGCCTCAGCAAGAGAGaTAAAGCCCTGGGTGCGAGACCTCGGCCTGCCAGTCCATTTTCCACAGATGGCAGCACTATGGGCACACACAGTCTGGGGCACCAGCGCGCAGCACGACCCACCCGCAAACACAGAGGCCCGGGCACAGCCCCGCACCGCAGGGACGCCAGTGCTGATGACCTACCTCCACCCCCAGAACCTCCACCCTTTCAGACCCCACGCGTCCAGGGGCAGAGGAGTATGGGGAGTCTAGGCAGCCCTGCTGAGCGAAAGGCCTCGTCTCTGGAGAGGCAGCCTATGGCCGGGCTGGAGGAGGTGAAGAGCTCTCTGGACAGACAAGCCCGGACCTCACTGGAGCGCCATCGGCAAGCCCAGGAGAGACTGGGCTCCATGGAGAGAGCAGAAGAGGCTAGAAGAGCTCAGAAGAACGGGCCGGTGTCAGAAGAGGTCATGCCACCCTATAGCAAACCATCCTTTCCCTCCCCCGGGGGCCACAGTTCATCTGGGACCACATCCTCCAAAGGCTCGACGGGCCCTCGGAAAGGAGAGGGGTCACGAGGTCAGCACCAGCGCGCCAACACTGAGCACGACTCCGGCTACGCGGGGATCAATGGCCAGGGACAGTACTCCGGAGAGTTATAGTGAACAGCCCTGAGCGTGAGCTGAACAATGCCTTTTCCTGCCCCGGAGACGCTTCTCCTGCTCGGTGCAATGGACTCGTAAAACGGTGTCAGGAGGAACGGATCTGACGAAGGCGGAGAGGAAAGCGCAAGCGAAAACTGTAAATGTGATGTAAAGACGGACATGCGACCCACAGTGTTGATTTGATGTTTTCTGTCCTTTCGAGAACAAACTAAACACCTTCCTCTttgaaaacgaaaaaaaaaaacattcattctGAGAAGACAACATGttggagagaagaaaaaaaaaacggagaaaaaaacaaaaaagagatcGGAAGCTTCATCCGACAGAGTCACCCGACATTTGTGAACTGGAAAAGGGAATCGTATTGTATTTCCTGTAAATATATTCTCAACGTTGAAAATTGTTCATTGCATCGCTATGCAAACTGGTTCCGTACGCTCCACGCCCCCCCATCCACCCTCGACCTCTTTACGCGCTATTGGTCATTTGTATTATATGTGAATTGATAGGCTGTGGTgccatacagaaaaaaaaaaaagattctgttATCATCcgtcatttgttaatatttctcATGGGTTTCATTGTTGTTCTTATTATGATTctgatgattattatgattcattgttttcttttgcaCTGCGATTTTTTGGTGAAAAGCACAAAAACCATAGCTCCCGCTGACATGAAGCACCGGGGGAGAGGAGATGTGAAGAGGAGTTGCTGTACTGTAActagagaaaagaaaatatatagcCATGTACAGAGATATATTAAACTAAGCCTGCGTTCCTTGGAGGCGCCGGGATTTGTGATGCTAAAAGGCAGAGTTGCACGAATGTTATTGGGCAGCGGTGGGGTTCTCCTGAGGCTATGACGGAGGGCGGTGGTACCCTCTCGATGTTGGAAACGTGCTGAAGAGAGataagaaacagagagagagaaagagagagagagatgttgacGCTTGGACAGATGATTGCTGGACCAGTGCAGTGCGGTGGTGTCAAAACCCCACTGCAATAAACGTCAACCCGAAAGTGGTCATGTTCCCTTTCACCCAAACCCCCCACCCCTGCCGACCCGAGTCCTGTTCAAACACGTTGTCTTATTCAGACGTGGGCCGGCAGACAGGACTTGGTTTACAGTACTTGCCGCCCGCTGTTTGCTTtcttgtgtttacttgtttgtgtgcgtgtCAGCCTTGCTCCTCTTTGAACATCACTCAATAGCTCACCCACTCTCTCCGCTCTGTCCATCAGAGTGCGGGCCAGCGTCAGGCGGACAGTAAGAGTGATGATGAGCTTTATGAATACGGTTTCTCTCTGGCTGtagtcccaatacttttgtatttatgacctattcttttttttttttccactaaaaGGTGGATCTTCTTAAAGCACTCAAAACGCAAGCAATTTAAAAGCCATATGAACAAGAATACTCTAAGTCTTCGTGTATAGTTTCTGTTCAGTCAATTTGTCGTTCTTTTAAACACTGGAAATTAATACATGAAGACGAGAATCTTGGGTTTTGGTGCTTTTGCAAGACCACTGTGTGATTTAAGTTTCCTTGAAAGCCTAGCTGTAAGTTTGGTTAGGATTGGCTGCTGCAATTTGGGAGCCTAAATCCATTAATCTTTTGTCCGTACTCTGCATTGATTTTGACCATGATTTTGATTTTGTAAATGTTCTCTGAAAGCTTCAGGCTCACTCACACTCCCTTTTCTAATGAAAATCAGTGTCTTTCAAACATTGTAATCATCACTGCCCACATGCGTTCTCTACATTGGCCTGGATGTGAAACAATACATACAATGGAGGACAGTTCATAGCTAAAAAGGGGTTTGGTTTCTGACAAGAACAATCAAGGCTACAGTGGAGTAGTAGTACTGGAGGTAGTGAGGTTCTTCGTCAGCATGTCTATTTGGCAGTGGTTGGGTTTCACTTCACAGGGTTCATAGGGTCATGAaacacctggaaaagtcatgaaataaaaaaaaaaaagcattaaatgagttttgaaaaaatttaaatatccaGAAAGTTTTGGTAAAGTTGTGGAAATTcgctctacaaatctttgtgtttccatttattgatggagaaaatctatttggAGCTAACAAATCAGAGTCAGCcgtacacaatggagctctcaggctctgacacacattttattattaaagattgtgtcaacattttatcggATTTATTTTAGACCTACAATAATcaatagttttagttgatttttggttttattgtccatgtctgcacttttaaaaattcatatggtcatgaaaatgtgccttgaaggcatggaaaagtcacaaaaatcatggaaatttattggttaaaatgtgtatgaaccCAGACTTAAACTAATGGCCAGTAATGAGACtaagcatatttttttaaagcttaccTCCGTTTCCATAAGCTTTCAGGtaataaagcaaaacaaaaacagacaaaacaaacacagaaggCTCCATCCGTATTTATAGCCATTTATGGATTGACATTGAGCTTTAATAAGTCTTTATGGATGTGGAAATTGTGTGGGTGCTGTGTAGCCAATAGTTTAAGTAAAACACAAACTATTGGCTATTATATGAAtatgatgaagaaaaaaaaacttagggcagattt

Function

symbol description
robo2 Predicted to enable axon guidance receptor activity. Acts upstream of or within several processes, including axon development; regulation of extent of cell growth; and sensory perception of touch. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; dorsal fin; nervous system; spleen; and trigeminal placode. Human ortholog(s) of this gene implicated in vesicoureteral reflux. Orthologous to human ROBO2 (roundabout guidance receptor 2).

NR:

description
PREDICTED: roundabout homolog 2

GO: NA

KEGG:

id description
K06754 ROBO2; roundabout, axon guidance receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679934.1 True 7694 mRNA 0.53 30 7829843 8482228

Neighbor

gene id symbol gene type direction distance location
dhx16 dhx16,LOC107704755 coding downstream 648910 7165536 ~ 7180933 (-)
rnf225 NA coding downstream 686933 7137056 ~ 7142910 (-)
LOC103038529 LOC108432985 coding downstream 696232 7123071 ~ 7133611 (-)
LOC103037673 LOC108432984 coding downstream 717594 7104292 ~ 7112249 (-)
LOC103038203 gabbr1a,gabbr1,LOC108432983,LOC107683297,LOC107586826,LOC108277950,LOC107704758 coding downstream 728449 7023176 ~ 7101394 (-)
LOC103024281 NA coding upstream 218969 8701197 ~ 8722610 (-)
LOC103023547 LOC108432992,LOC103353587,LOC100691215,LOC108277929,LOC102314497 coding upstream 244103 8726331 ~ 8787049 (-)
mrps23 NA coding upstream 375098 8857326 ~ 8862790 (-)
LOC103026958 nos2,LOC108432969 coding upstream 385093 8867321 ~ 8890459 (-)
LOC103031688 nos2,LOC108432969 coding upstream 429592 8911820 ~ 8933110 (-)
G2192 NA non-coding downstream 7397 7817705 ~ 7822446 (-)
G2162 NA non-coding downstream 18230 7811117 ~ 7811613 (-)
G2152 NA non-coding downstream 49172 7779385 ~ 7780671 (-)
G2133 NA non-coding downstream 274684 7538002 ~ 7555159 (-)
G2103 NA non-coding downstream 515218 7314424 ~ 7314625 (-)
G2289 NA non-coding upstream 14967 8497195 ~ 8497545 (-)
G2301 NA non-coding upstream 75494 8557722 ~ 8558144 (-)
G2313 NA non-coding upstream 101555 8583783 ~ 8583991 (-)
G2324 NA non-coding upstream 141174 8623402 ~ 8623633 (-)
G2327 NA non-coding upstream 145464 8627692 ~ 8627903 (-)
LOC103031123 LOC108411357 other downstream 2108735 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 3508503 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 3557873 4267001 ~ 4271970 (-)
G1308 NA other downstream 3728277 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 3920172 3882370 ~ 3909671 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 471649 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 631251 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 1264394 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 1765237 10247465 ~ 10461860 (-)
G2783 NA other upstream 2100061 10582289 ~ 10582747 (-)

Expression


Co-expression Network