G98907


Basic Information

Item Value
gene id G98907
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 10049062 ~ 10051793 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU133355
GCGTAATGTTTTccaacagtataacagtatatcGACCACTTTGACCCACTGGCACTGTGAGATCATGGAATAGCTCCACTTAGATAGTTATGAGCATATCTGAGTAAAGTTGAGTATGTATGCTTAAACAGCACTCAGCATAGACTATGCATATAGAGTTctataagatataagatatatagatagatataagagaccacttaaaaatgatgagtttctttgattttaccaaattgcgcattgaaaacctctggaaaaccAGGAGAgcagacataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaactgtgattaaaaaccagggttgttccaccaaatattgatttcttaactcttaaactttatgagtatgaacttgttttctttgcattatttgaggtctgaaagctctgcatctttttttgttatttcagccgtttctcattttctgtgaataaatgctgtaaatgacaatatttttattggaatttgagagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaaccgattcagaaactgaagtgatctcttattttttcccccattaaAATTCAAATGATATTCTTCACCCTACATGTGTTTTCGTCCGACAAATGTCACTGAATCCTCTGAGGTTGGAAAATGACTCAGAATGTGAACACAGCAGCACATAAGCTAATCCTGCTTTTATATAAATGACAATAGATAAAGGATGGCAAACAGGATCACCAGTAAGTGTAAGTATGTTCCAGCTGTCCCAGCTTTTGCTGTCAGTGAGTGATGGAGTAATCCGGATGTTCGTTCTCCATTCTCTTCGGATACTgtagtgcaggggtgtccaaattacggcccgcgggccatttgcgggccatttccttttttgtagCGGCCCgagaggtattttagaaatagaatgaaagttggcccgctgttaagcaggtttttataatgtgagattcaaagtttgaacgctaggtgtcagaaacgggccaaagagcctaaaagtggagagggtgcgcagtttcagcgcagaaaaaaacgagccaaagagtctaaaagcggagagagtgcacatttctagcgcagaaaaaacaggccaaagagtctaaaagcggagagggtgcgcagttatagcgcagaaaaacgggccaaagagtctaaaagttgccgtaattaaggagttaatattaagagacatcaagAAATGAAACatgaatttgaaaaatcttagtttacacaacactgtcaaagatagataaagatagtaagtcaattaaaatgatgtgtaaatgaaagtaatcaggaaaatgtattatttaaagtggtatatttcattatttgttttattacagagtctgtggcccgtgactccaaatatatttctccttctggcccccaacaaaaaaagtttggacacccctgcggTAGTGTATTCAATTCTGAGAGCTTTTACTCTGGTCAGTAATCTGATCAACATTTATATACGAATTTAGCTAATCAGATTGTTCTTTGCAGCCAGCCAACAAACTTGCAGAATAAGGTGTAGACATCATATATACGTAGACACTATAATACCATAAAAACTTCATATCACAGATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133355 True 1686 lncRNA 0.37 2 10049062 10051793

Neighbor

gene id symbol gene type direction distance location
LOC103025485 NA coding downstream 8041 10034747 ~ 10041021 (-)
LOC103040958 NA coding downstream 37351 9998655 ~ 10011711 (-)
LOC103025791 LOC103025791 coding downstream 67884 9973281 ~ 9981178 (-)
p3h3 p3h3 coding downstream 279006 9754233 ~ 9770056 (-)
LOC103042898 gnb3a,gnb3,LOC103042898,LOC108432288,LOC107672997,LOC102782474,LOC107549492 coding downstream 305144 9723291 ~ 9743918 (-)
LOC103039304 NA coding upstream 19927 10071720 ~ 10092767 (-)
LOC103025185 NA coding upstream 68139 10119932 ~ 10170053 (-)
grik5 grik5,LOC107551699,LOC107717427,LOC107700189,LOC107671209 coding upstream 123611 10175404 ~ 10324815 (-)
LOC103037398 znf574 coding upstream 401274 10453067 ~ 10467258 (-)
LOC103035017 pou2f2 coding upstream 561755 10613548 ~ 10704167 (-)
G98916 pafah1b3,LOC107755833,LOC108266541,LOC108432331,LOC107671211,LOC107578591,LOC107700190 non-coding downstream 3754 10043912 ~ 10045308 (-)
G98904 NA non-coding downstream 45272 9994644 ~ 10003790 (-)
G98884 NA non-coding downstream 99902 9858723 ~ 9949160 (-)
G98873 NA non-coding downstream 213699 9834366 ~ 9835363 (-)
G98806 NA non-coding downstream 256064 9790968 ~ 9792998 (-)
G98918 NA non-coding upstream 11150 10062943 ~ 10063260 (-)
G98912 NA non-coding upstream 11921 10063714 ~ 10069023 (-)
G98925 NA non-coding upstream 54338 10106131 ~ 10112763 (-)
G98928 NA non-coding upstream 87136 10138929 ~ 10139152 (-)
LOC111193449 NA non-coding upstream 98998 10150791 ~ 10156520 (-)
G98804 NA other downstream 248144 9799623 ~ 9800918 (-)
LOC103043823 tpi1,tpi1b,LOC107700200 other downstream 471009 9560132 ~ 9578053 (-)
LOC103027931 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC107672985,LOC107598403 other downstream 511392 9529636 ~ 9537670 (-)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 other downstream 869694 9162401 ~ 9179368 (-)
LOC103034868 NA other downstream 1134131 8901468 ~ 8914931 (-)
erf erf other upstream 452161 10503954 ~ 10580725 (-)
G99033 NA other upstream 552137 10603930 ~ 10606219 (-)
G99212 LOC108443719,LOC107595576,LOC107657689,LOC107699452,LOC107593646 other upstream 1203804 11255597 ~ 11260752 (-)

Expression


Co-expression Network