CI01000012_00194370_00195347 (HCAR1-3)


Basic Information

Item Value
gene id CI01000012_00194370_00195347
gene name HCAR1-3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 193903 ~ 195676 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_00194370_00195347.mRNA
GAATAAAAGGAAAGCATGCGTGATGGTTTAAACATCTGTTCTTGAATGGATAAATTGTCTTTTATAAATCTGTCAACTTTTGTGGATGCCATGCATCACTTAAAGGGTTAAAATTCACTTTGGTGTAGAATTATTTCAAGTTGCGGGTGCTCATGCAACAGTACTTTTAACTACTGGTTTATGAAACTGTTGTTACTCTAAAACAACTGCGTCAGCATTTTACACTAAGCAGAAAGACACACTTCCTTATATACCACAAACATCCTCCATTGTTGCAACAAGTTTACTTCTACTTCTAGGGGAGAGTGAGGAGTGTTGTAACACAAGTTATTTGTAACACCATCCTTTTATCTAATTAGAAATGTGTTCCTGAGGTGAAAGCAGAATGGTACTTCTGTTGCAGAATTGTGTTGAACTGTGAACTGTATTTACAGAAACTACACAGCAACTCTGACTGTTGAACTACCATGACGTCGAACATCACTGCACATCACTGCGGTACGTCCACTCAGAACCTGGTTGCATCCGTCCTTCCTCCTTTACTCATCATCGAGCTGTTACTTGGTCTACCTGGCAATATCTTGGCACTGTCAGTCTTCAGCAAAAACTTTAAGTCTTGGAGGGCCAACGTCATGTTCCTCTTCAACCTGGTTTTGTCTGACTTTCTTCTTCTGGTGAGCCTACCCTTCCGTATTGACAATTTTATTCGTGGCGAGAAGTGGGTATTTGGAGATGCATGGTGTCGGGTCAACCTATTTATGCTGTCAGTCAATCGTTCGGGTAGCATTGCATTCATGACCGCTGTGGCTATTGACCGCTACTTTAAAGTGGTCCATCCTCATCACAAAATTAATCACATAAGCACAAAACTAGCAGCTGGGGTTGCCTGCCTCATCTGGAGTGTTGTGATATCTCTAAGGATCCCTTTGCTGGCCAACAATCTTCTGAGAGTGGAAAATAATGTTTCTCTTTGTAGGAGCTTCAGTAACTATGAGAAACCACCACTAGGCATCCGCCTGCATTATGCAGTGTTTATTTCAGAGTTCTTTGTGCCTCTAGTACTTCTAGTCTTCTGCTCTGTTCGTATTGCATGTATCCTACGGTCTCGCCAGATGGACAAGGACAAGAGAGGGCAAAGGGCTATTCGAACTGTACTAGTGATCGTTGGGGTTTTTGTTTTCTGTTTCTTCCCTAGCATTGCCACAGGATTGACAACGCTCTATTTTAAAAGTCTTGGAGAGGAGTACTGTAAGGCTTACAGCCTCACCAGTCAGTTGTTCTCTATGTCCATAGCCTTTACCTACCTAAACAGTGCTCTGGACCCGGTCATCTACTGCTTCTCCAGCTCTATCTTCCGCAATTATTTGAAAAGAGCCATAAACCAGACAGGCTTAACGAAGCTACAGATGAGCCGACGGGACAGTATGCCCAGCGGAAGTGATTGAATGGATTGGGGTTTTATAAGCATTGGTGCAGTGTTACTGCTTAGTATACAATGACTTTTTCATTATAGTTTTGTTTGTCTAGTTTTGTTTGTGAAACATATGCAATATTAACATATGACATATGTAATAACATATGTAATATATTTTGGACTTTTTTTGTTATGATGCATATAGTACAGAAATTGTATAAAATACATCATGTCATGATCTGCTTTTAATGTAATTAATAAATAAAACAATAAATAAAATAAAGCCATATAAGAATTATAATAAAAAATTTTATTTATTTATTTATTTATTTATTTATTTTTAGAAATTTGGATAAAGAA

Function

symbol description
hcar1-3 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human HCAR1 (hydroxycarboxylic acid receptor 1); HCAR2 (hydroxycarboxylic acid receptor 2); and HCAR3 (hydroxycarboxylic acid receptor 3).

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_00194370_00195347.mRNA False 1774 mRNA 0.39 1 193903 195676

Neighbor

gene id symbol gene type direction distance location
CI01000012_00030966_00032941 NA coding upstream 160848 28818 ~ 33055 (+)
CI01000012_00318129_00318595 NA coding downstream 122453 318129 ~ 319418 (+)
CI01000012_00502185_00516358 NA coding downstream 304475 500151 ~ 516908 (+)
CI01000012_00593086_00594741 NA coding downstream 396450 592126 ~ 595465 (+)
CI01000012_00644021_00646785 NA coding downstream 448345 644021 ~ 647075 (+)
CI01000012_00886127_00889703 NA coding downstream 689444 885120 ~ 890337 (+)
G68361 NA non-coding upstream 3847 189856 ~ 190056 (+)
G68353 NA non-coding upstream 11701 178487 ~ 182202 (+)
G68352 NA non-coding upstream 17837 175827 ~ 176066 (+)
G68329 NA non-coding upstream 31842 161599 ~ 162061 (+)
G68339 NA non-coding upstream 57986 130927 ~ 135917 (+)
G68364 NA non-coding downstream 48359 244035 ~ 244771 (+)
G68267 NA non-coding downstream 102943 298619 ~ 306993 (+)
G68273 NA non-coding downstream 113098 308774 ~ 309101 (+)
G68373 NA non-coding downstream 119695 315371 ~ 315665 (+)
G68272 NA non-coding downstream 148984 344660 ~ 345058 (+)
G68282 NA other upstream 133371 26390 ~ 60532 (+)
G68660 NA other downstream 339890 535566 ~ 535953 (+)
G68725 NA other downstream 487847 683523 ~ 684856 (+)
G70029 NA other downstream 2426802 2622478 ~ 2631385 (+)
CI01000012_04424569_04425090 NA other downstream 4224563 4424569 ~ 4425756 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005792 hcar1-3 coding NC_007124.7 CM002897.2 8987957 ~ 8994070 (+)
eurasian perch (Perca fluviatilis) G189035 NA non-coding NC_053129.1 CM020926.1 32649830 ~ 32650345 (+)