G134035


Basic Information

Item Value
gene id G134035
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 23476154 ~ 23476910 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181287
CAGAGTAAAGCGAGTTGCAGTAGTCCAGTCTACATGTAATAAACGCATGTACCAGTTTTTCGGCATCAGATGGGGAAAGAAAAGGTCTGAGCCTAGCAATATTTCTAAGATAATAAAAGGAAACTTTACAAATGTTCTTGATGTGAGTCTCAAAATTTAACTCACTATCAAAAATAATGCCTAAATTACGCACCTGTGAAGTGGGCAATATCCGAATAccatcaataataatattaaaattcctGATCTTAAGCAAAGCAGAGGGACTACCAATTAAAATAACCTCAGTCTTAGAGCAATTTAACTGGAGGAAATTCTGTTGCATCCAAATTTTTATCTCATGTAGACACACTGAGAGCAACTCACATGCAGGTGCCAAATCACTCTTGCAGCTAAAATAAACCTGAGCATCATCAGCATAAAGATGAAAATTCAAACCATATTTCCTAAAAATGTGCCCAAGTGGCaacaaataaatactaaaaagtAAAGGCCCAAGAATGGAGCCCTGAGGAACCCCTTGACCAACCTGAACAATGTGAGATTTATTCCTACCTAACGTCACAAACTGATTTCTACCAGAGAGATATGACTGAAACCAGGAGAGCACAGTACCCGATATACCCAGCCACGTTTCCATCCGATCCAACAAAATCGAGTGGCATACTGTATCAAAGGCCGCAGTAAGGTCCAACAAAATAAGGATATTAATATAACCCTCATCCGCTGAAACAAGAAGGTCATTGACAACCCTCAC

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU181287 True 757 lncRNA 0.39 1 23476154 23476910

Neighbor

gene id symbol gene type direction distance location
bhlhe23 bhlhe23 coding downstream 22471 23451233 ~ 23453683 (-)
LOC111194042 NA coding downstream 207896 23260640 ~ 23268258 (-)
LOC103033828 dnmt3bb.1,LOC108435229,LOC108276083,LOC107672053,LOC107657059,LOC107563667,LOC107747976,LOC107603157 coding downstream 473019 22938488 ~ 23003135 (-)
LOC103037932 NA coding downstream 542270 22917415 ~ 22933884 (-)
LOC103038563 NA coding downstream 586087 22859673 ~ 22890067 (-)
tfip11 tfip11,LOC107737658,LOC107657044,LOC107671994,LOC107741308 coding upstream 155450 23632360 ~ 23642280 (-)
pm20d1 pm20d1 coding upstream 249183 23726093 ~ 23736836 (-)
LOC103022977 NA coding upstream 262051 23738961 ~ 23774264 (-)
LOC103022668 mfsd4a coding upstream 314885 23791795 ~ 23800244 (-)
LOC103022153 nucks1,LOC108435247 coding upstream 327330 23804240 ~ 23811410 (-)
G134026 NA non-coding downstream 18459 23457458 ~ 23457695 (-)
G134023 NA non-coding downstream 25622 23450244 ~ 23450532 (-)
G134015 NA non-coding downstream 218962 23256098 ~ 23257192 (-)
G133982 NA non-coding downstream 464496 23009793 ~ 23011658 (-)
G133905 NA non-coding downstream 626793 22848763 ~ 22849361 (-)
G134087 NA non-coding upstream 66666 23543576 ~ 23600365 (-)
G134096 NA non-coding upstream 166958 23643868 ~ 23690400 (-)
G134110 NA non-coding upstream 247061 23723971 ~ 23725419 (-)
G134127 NA non-coding upstream 284506 23761416 ~ 23761691 (-)
G134123 NA non-coding upstream 297835 23774745 ~ 23776529 (-)
LOC103034468 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC107395067,LOC108435227 other downstream 559770 22909821 ~ 22916384 (-)
LOC103038244 NA other downstream 574522 22890646 ~ 22901632 (-)
LOC103040235 fkbp1ab,fkbp1a,LOC108435222,LOC107707744,LOC105013763,LOC100705189,LOC101476936,LOC107657066,LOC103384692,LOC107747971 other downstream 628243 22839397 ~ 22847911 (-)
LOC103040989 LOC108438207,LOC108276489 other downstream 4164110 19198350 ~ 19312044 (-)
LOC111194101 NA other downstream 4497965 18976472 ~ 18978189 (-)
G134093 prim1,LOC107741309 other upstream 147371 23624281 ~ 23631155 (-)
G134312 LOC108436342 other upstream 795834 24272744 ~ 24273069 (-)
LOC111194023 NA other upstream 954249 24431159 ~ 24433471 (-)
trpc4ap trpc4ap,trpc4apb,LOC107741324,LOC107737634,LOC107562468,LOC107672047,LOC107560917 other upstream 1007055 24483965 ~ 24494425 (-)
LOC111194123 NA other upstream 1144707 24621617 ~ 24631857 (-)

Expression


Co-expression Network