LOC103038563


Basic Information

Item Value
gene id LOC103038563
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 22859673 ~ 22890067 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677349.1
GAAATGTTTTCAGAAACACGGACAGTCCGTTCATCTCTGAGACAACAGAGAGTTTGACACATTtggggagagaaggagaggtgTAGTTaccttcagccaatcagatcgcTGCACTGAGGTCACGTGTGCCAGCCGCTCTCGTGAAGCTATGAAGGATGGTCTCGAGCACAGCTCTCAGATACTTCAACTGGCTGCTGAAGTTTACTGCAGGACAGAGTAACAGAGCAGTCGACAGAGGGTTTAACCCGTTAACTCTGAAGTTTAAAAGCGCAGGGAGGAGAAGGTTTTGCTGGTGTTGTGTGAACTAAGCTGCTGAGGAGGAGAAACATGGCTCAGGACTGTGGAGAAGTACAGCTGAAGGAGGTATCCAGTGATAAACAGCAGCCAGACAACCAACAGaaagcTACAGGAATCCCATTGTCGAGGAAACTATGCTACGCCATTGGTGGGATGCCCTATCAAATGACGTTAAATGCCAAGGCCTTTTTTATGCCTATCTTCCTTCTTGACGTTGTGCATATGCAGCCGTACTATGTGTCCATAATTCTTTTCCTTGGGCGGGCCTGGGATGCCGTCACTGACCCACTGGTGGGCTATGCAGTCAGCAAGAGTGGCCGCACTCGCATTGGCAAACTCATTCCCTGGATAGTATGCAGCACACCACTGGGAGTAATCTCCTACATCATGGTGTGGCACACTCCCCAGGAAAACATGTCTGCTGTCTCCAGCTTCTGCTGGTACTTCTTTTGGATCTGTCTTTTTGACACTTTCCTTAGTtgctACCATGTGCCCTACTCCTCTCTGAATATGTTTTTGGGCGGAAATGATAGAGACAGAGACTCAGCTACTGGCTACAGGATGGGGATGGAGATGTTTGCGACACTGCTGGGGGCTGCTATTCAGGGTCAGATTGTGGGGGTCCACCATGCTAAGAAGGCAAATGCTTGCAGCCATCTGAATAACAGCGAAGCGCTCACTGACAATGACTCAGTTACACTGGACCCAAACTTCACCTCCCCTGACACGACACTACAGAATACGAGACAAGCATATTTGATTTCAGCACTGGTGATAGGAGCTTTCTATTTCCTGTGCTGCCTCGTGCTGTTCGTTGGAGTGAAAGAGCAGTTGGCTCCACTGAGTAAGCTGGACCGCATACAAGTTCCGTACCTGACCGGCATGAAAATGATTGTGAAACATACCCCTTATTTGTGGCTCGTGTTTGGATTCTTCTTCTCTTCCGTTGCTTTTCAGCTGGCTCAGTCAAACTTTGCTCTCTTCAGTACACATGCCGCCGGAATGGGGGCATACTTTCAGCACCTTATGCTCATATTGCTGATCGCAGCTACCTTGTCCGTTCCTCTATGGCAGATGGTATTGGTCAGACTGGGAAAGAAGACCACCATCTTCATGGGCCTATCAATCTACATTCCATCACTCATCATTTTAACTAGTGTGAAGGGCAGTTTTCTTGGTTTTGCCCTGACAGCAATTTTAGCGGGCACCAGCCTAGCAACCCTCTTTTTACTGCCTTGGTCAATGTTGCCAGATGTGGTGGACGACTTTAAGGTGAAGAACCCATCGTTCACAGACCTGGAGCCCATGTTCTACTCATGCTTTGTTTTGTGCAACAAGTTTGGAGGAGGCTTGTCAAACGGAGTCTCCACTCTAGCACTACAATTCGTAGGCTACCAGCCTGGTGCATGTAGGCAAAACCCCAGAGTGATCACCACGCTGCAGGTGCTCTTCGCTCCAGCTCCCATTGTTCTGCTGCTGATAGGCATGCTGCTGTTCTTCTTCTATCCCATCAATGAGCAGCGGCGGCAGCAGATCCAGACTGAACTCCAGAAAATAGTTGCGAAAGGACAGACAGTGCAGGAAGTTTATCTGTGAAGAATTCCCACCGGACCTGAATGCaccttatattattatttttctataattaattattatactgtaaatattatcTGAATtcaaaatgtattgttattttaacatttttagacaATAATGCACATGAAATTAtgtatctaatttttttttttattaatacagattttattatgtttttatgtttgttccAAATGTGCACATATTCAaagctggagaaaaaaaaaatcattctaaACAGCAACTGTTGTATGTGATATGTGATATGTATTATTGAGCTCTCTGAGTCTTTTATAAAGAATGAATTAAGAATATGATTCTGGGAAGGGATTTAAAAACACCTCAAAACAGTTAGAAATTAGCCATTTCACTgtccaaaaaataatttttaagtggagaAAATGTAGAACCACTAGACATATGACCAGATCATTATATTCTAACAAGTTCAGCCCACAATAGCAGACCACAAGATGTCTTAAACATTCCTAAAATATCATCATGGGACCTGCAGGCAGCTCTTAGAGCAGTTGATGTACACACATCTACTATCAGAAAGAGGccaaacctttttttaactgCCCATTGCTGTAAGAAATGTTATCAGAGAACATTGAGACAAACACCAGGACTTCTGCAAAAATGTGATTTGGACAGATACATCCAGTTGAAATATTTGGTGTTGGTTTGGAGCTTCTTTGCTGCTGCAGGGCGTGACAAGCTCCCCATTAAATTTCATTATGAATTCTTCACTGTACTGGGAGGGTGCTGTCCACAAATGTGGGTTGATTTGAAACTGCCTGCACAGGCAAGAAACCACTCAAACCTcacagaaattaaaaaaattctgtatggaagaatggaaaaaaaattctTCTATTTAACGTTGGAGACTGGCAAATGGTTACAGGAAATGTCTAGATAAGGTAATTCCAGCCAAAGAGGGAAATGCCAGCTACTAGATCATGGGggctaacttttttttctgacaagataaaaaaaaaaaacgtatttttaaAGGCAATGTctctagtttaatttatttatttgtcataTAAGCTTTATCtcttaatactttttaaatgcagctcaaaggtccatatgtttaaataatttcaaAAAGGTTTTTATGACCTGTCCTAATTTTTGCACATGACAAATGAAGTGAATAACACTGATTGTATTGTCACAattaagagagtgagagatcaTTA

Function

GO: NA

KEGG:

id description
ko00290 Valine, leucine and isoleucine biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677349.1 True 3104 mRNA 0.42 14 22859673 22890067

Neighbor

gene id symbol gene type direction distance location
LOC103039708 sdcb1,LOC108435221,LOC104919459,LOC106572119 coding downstream 21943 22809311 ~ 22837730 (-)
LOC103041770 NA coding downstream 486956 22370053 ~ 22372717 (-)
LOC111194118 NA coding downstream 521723 22332994 ~ 22337950 (-)
gata5 gata5,LOC107681871,LOC107747495,LOC107690861,LOC107559469 coding downstream 691228 22159793 ~ 22168445 (-)
rbbp8nl NA coding downstream 760524 22074057 ~ 22099149 (-)
LOC103037932 NA coding upstream 27348 22917415 ~ 22933884 (-)
LOC103033828 dnmt3bb.1,LOC108435229,LOC108276083,LOC107672053,LOC107657059,LOC107563667,LOC107747976,LOC107603157 coding upstream 48421 22938488 ~ 23003135 (-)
LOC111194042 NA coding upstream 370573 23260640 ~ 23268258 (-)
bhlhe23 bhlhe23 coding upstream 561166 23451233 ~ 23453683 (-)
tfip11 tfip11,LOC107737658,LOC107657044,LOC107671994,LOC107741308 coding upstream 742293 23632360 ~ 23642280 (-)
G133905 NA non-coding downstream 10312 22848763 ~ 22849361 (-)
G133903 NA non-coding downstream 50512 22805403 ~ 22809161 (-)
G133881 NA non-coding downstream 126565 22731557 ~ 22733108 (-)
G133865 NA non-coding downstream 228074 22631208 ~ 22631599 (-)
G133843 NA non-coding downstream 312740 22546025 ~ 22546933 (-)
G133982 NA non-coding upstream 119726 23009793 ~ 23011658 (-)
G134015 NA non-coding upstream 366031 23256098 ~ 23257192 (-)
G134023 NA non-coding upstream 560177 23450244 ~ 23450532 (-)
G134026 NA non-coding upstream 567391 23457458 ~ 23457695 (-)
G134035 NA non-coding upstream 586087 23476154 ~ 23476910 (-)
LOC103040235 fkbp1ab,fkbp1a,LOC108435222,LOC107707744,LOC105013763,LOC100705189,LOC101476936,LOC107657066,LOC103384692,LOC107747971 other downstream 11762 22839397 ~ 22847911 (-)
LOC103040989 LOC108438207,LOC108276489 other downstream 3547629 19198350 ~ 19312044 (-)
G133109 NA other downstream 3870676 18969635 ~ 18988997 (-)
LOC111194101 NA other downstream 3881484 18976472 ~ 18978189 (-)
col24a1 col24a1,LOC107655744,LOC107709510,LOC107660294 other downstream 4216977 18444933 ~ 18642696 (-)
LOC103038244 NA other upstream 579 22890646 ~ 22901632 (-)
LOC103034468 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC107395067,LOC108435227 other upstream 19754 22909821 ~ 22916384 (-)
G134093 prim1,LOC107741309 other upstream 734214 23624281 ~ 23631155 (-)
G134312 LOC108436342 other upstream 1382677 24272744 ~ 24273069 (-)
LOC111194023 NA other upstream 1541092 24431159 ~ 24433471 (-)

Expression


Co-expression Network