LOC103041770


Basic Information

Item Value
gene id LOC103041770
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 22370053 ~ 22372717 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250793.2
TCAGGACGTGAACGATCAAGAACAAAAATGCCTCCAGTACAGTTATTCCAGAAGTTCTGGCTTAGCTACTGTGCCCtggttcttcttctcctctctcagGGTTCATCAGGCTGTAGGACGGGGAATTTACAGGAGTGTCTGAAAGCTCCTTTTGTTCCTGGTCATAACCTGGTTGGTGAGGGCTTTGACGTGGTCACTCTTCAGCGTAAAGGAGCGTATGTCAGTGATGTGCAGACCTTCCTGACACCTACTAACTCCTGCACCTTGTGCGAGAACCCCTTCATGGGCGGCGAGCTTCAGAAACTTCCTCTGTCTGTGCTGGATTGGCGCGCCACCAATAGATGCAACCTTCAGATCTCCGGTGCGGTCTTCTCCTCGGTCAGTTCTCTTCTGGAAAGTTCTACCTCGATGATTGAGAACGACTGGAAGGTGGGCTTGAACCTGAAGGATGTTGGACTGCAGCTGGGAGGCAGCAAGTCTGAAGAGGCGACATTCGCAAATTCGAGATTGAAAGTGGACAAGACGTACTTCTCCTCCCATCAGCTGAGCTGCACTCACTACAGTACCCGTCTTCCAAACCTTCCTTCTGTCAATCCAGACTTCCACCGTCATCTTCTCTCTCTACCCAAAAACAACACAGTAGAAGCAAAGCAACAGTATCGCAACTTTATTGACACCTACGGTACCCACTACATCCGCAATGCTAACCTCGGTGGGAAGTTCAAAAGAGTGACTTCCATTCGTACCTGTTTGGCAACCCTCAACAGGGTCTTAGCCAGTCAGGTGAACTACTGTTTGAACAGGGGTCTAAAAGTAGGGCTTGGGTTAGCTGATGTCTCCATTCTAGGATCTAACTGTAGGAGAATCTTGTCAAACCAAGACAGTGTGATGAATTACACCGAGGGTCTTATGAACCACTTGACCAAGGTTTCTGGAGGAAATGGATGGCTTGGAGAGGTTTCACTGACCAAAAACGACTCCCAAGGCTTCAACTCTTGGCTCGGCAGCCTCAAGAACAATCCAGACGTCATATCCTACTCTGTCTTTCCTCTGCATCAGCTTGCAGAGGATCCAGATGTGAGAAGAAACCTGCAATCTGCCATAACTCAGTACATCAAAGATAACGGGCAACTGAAGAAGTCGCCTCCATGGTGCTTTTGGAACAAACCCAACCTTTCGCTAAACTGCTGTCCCTTCAAGAGCCAGAGAGGGTTGCTATCGGTGACCGTGATTAGAGCTTGGGGTCTTAAAGGTGATTTAGTGGGCAAAACTGAGGGCTACGTCAAAGTGCGGTATGAAAGACACTTCAGACAGACGCACTGGATCAGATCCAACGACCCAACATGGAACCAGACGTATCACCTGGGAAATGTATACAGCGGTAGCCGTCTGAGATTAGAGGTATGGGACAAAGATGTCCGCTATGATGACCTTCTGGGAGGATGCTCTGTGAGCGTGACAAGTGGAGAGCATCGGCATGTCTGTGGTCTGAACAATGGACGCTTTGAATTTTCTTACAAGCTTTCTTGTGACCAATACTTGACTGGGCCTTCCTGTAACGCCTACATCCCTAAGCCATAGTGATCCCTAAGATCTATGGCAGTGTTTTTCAAATCTTGTCCTGGTGTCATCCTTGATCAGCACATTTTAGAGGATTGCCTGCTTTAACACAACCACTACAACTCTAGAAGTTGAATCGGGTGTGTTGGGAGACAGGAAACCATTCATTTGCAAGGGTGGTTCCAGGGCCAGGATTGAAGAACCCTGATCTACAACATCTACAGAATGTTCAGAAAACACtatattaacaatataaatCGGGAGTATTGTACAGCAAAGTCTAACatttaatgtgtatatattgtaaaaaaaaacaatctcttcttaatattaaatactacTAATGAAACTAGTATTACTCTTGAAGTGTACCTTAAATTAGCAATCGgagggggctctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250793.2 True 1961 mRNA 0.47 2 22370053 22372717

Neighbor

gene id symbol gene type direction distance location
LOC111194118 NA coding downstream 32103 22332994 ~ 22337950 (-)
gata5 gata5,LOC107681871,LOC107747495,LOC107690861,LOC107559469 coding downstream 201608 22159793 ~ 22168445 (-)
rbbp8nl NA coding downstream 270904 22074057 ~ 22099149 (-)
hck hck,LOC107747493,LOC107690859,LOC107681869,LOC107707747 coding downstream 309833 22027392 ~ 22060220 (-)
tm9sf4 tm9sf4,LOC107681873,LOC107690854 coding downstream 345961 22001639 ~ 22024092 (-)
LOC103039708 sdcb1,LOC108435221,LOC104919459,LOC106572119 coding upstream 436594 22809311 ~ 22837730 (-)
LOC103038563 NA coding upstream 486956 22859673 ~ 22890067 (-)
LOC103037932 NA coding upstream 544698 22917415 ~ 22933884 (-)
LOC103033828 dnmt3bb.1,LOC108435229,LOC108276083,LOC107672053,LOC107657059,LOC107563667,LOC107747976,LOC107603157 coding upstream 565771 22938488 ~ 23003135 (-)
LOC111194042 NA coding upstream 887923 23260640 ~ 23268258 (-)
G133779 NA non-coding downstream 22020 22347773 ~ 22348033 (-)
G133773 NA non-coding downstream 38897 22321300 ~ 22331156 (-)
G133772 NA non-coding downstream 87770 22280540 ~ 22282283 (-)
LOC111194116 NA non-coding downstream 221891 22119289 ~ 22148162 (-)
G133741 NA non-coding downstream 262037 22106561 ~ 22108016 (-)
G133808 NA non-coding upstream 39820 22412537 ~ 22418169 (-)
G133821 NA non-coding upstream 106162 22478879 ~ 22479123 (-)
G133822 slco4a1,LOC107838369,LOC102216411,LOC106572122 non-coding upstream 107122 22479839 ~ 22480253 (-)
G133825 NA non-coding upstream 123359 22496076 ~ 22496313 (-)
G133828 NA non-coding upstream 139901 22512618 ~ 22512933 (-)
LOC103040989 LOC108438207,LOC108276489 other downstream 3058009 19198350 ~ 19312044 (-)
G133109 NA other downstream 3381056 18969635 ~ 18988997 (-)
LOC111194101 NA other downstream 3391864 18976472 ~ 18978189 (-)
col24a1 col24a1,LOC107655744,LOC107709510,LOC107660294 other downstream 3727357 18444933 ~ 18642696 (-)
LOC103045666 LOC103045666,LOC108425511,LOC107707041,LOC106565412 other downstream 4873531 17482375 ~ 17496522 (-)
LOC103040235 fkbp1ab,fkbp1a,LOC108435222,LOC107707744,LOC105013763,LOC100705189,LOC101476936,LOC107657066,LOC103384692,LOC107747971 other upstream 466680 22839397 ~ 22847911 (-)
LOC103038244 NA other upstream 517929 22890646 ~ 22901632 (-)
LOC103034468 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC107395067,LOC108435227 other upstream 537104 22909821 ~ 22916384 (-)
G134093 prim1,LOC107741309 other upstream 1251564 23624281 ~ 23631155 (-)
G134312 LOC108436342 other upstream 1900027 24272744 ~ 24273069 (-)

Expression


Co-expression Network