G133741


Basic Information

Item Value
gene id G133741
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 22106561 ~ 22108016 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU180873
GTTCATCCAAATactgacatgaaaaaaaaatctgaataaaaaacagaatgcaaattTAATAGACCTATACtttattcacaatagaacaCAGAGGACAAGTCTGATGGTAAAAAGTAAGACAgttgacgaaaaaaaaaaaaaaaggaaaaaatatgcaaaaagaaaataaagaaataataagtaCTAAAGTCCAGGAGGACTTGTAAGCAGCACTACCAAAGAAATAATACTGTCTTGTAGCAGCCAGTAGGACTAGCAACTCAAATTACCTAGCCAAAAACAATGACCAACAAGAAAACCAAGCAACCAACTAACCAAACTTTTCCCTCCAAAAGGCAGCCCCTTTTAAACTTGCAGCCCCACCCCTAATTGAGAAAGCCTGCACCATTGCTTACAAGTAGAGGTGAAGTaaaaatcacacacaatcacatacaCACCTTCTTACACACATCTACTGCAGCAAAAATATGTACAGACATGTCTTACCATTATCATAGTTTACTatagtaagtaaagtaagtatacttaattatttaataaactacattattattatttccttcCCCACAGGTATCACAGGAGATGGAACCTGGAGTTCTTCTGGGCACGTCACGGGATCCggttcagttttactgaacgcaagcggCAAGTTTAATGTCTGGAGTTCAAGTTCTCCCACATCGCTCCTTTGCACGTGCTCACTGAAGAACCTGAAAGGGTGGAGTGAAGTTTACTTGTGGAGGAGTGGATTTGGGTACAGACGTATTTCATaccaattttatttattgcaaCTTTATTACAACTGCATGAGTTAAATCATTAGGATATTATGAAATAAGTAAAGTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180873 True 849 lncRNA 0.36 2 22106561 22108016

Neighbor

gene id symbol gene type direction distance location
rbbp8nl NA coding downstream 7412 22074057 ~ 22099149 (-)
hck hck,LOC107747493,LOC107690859,LOC107681869,LOC107707747 coding downstream 46341 22027392 ~ 22060220 (-)
tm9sf4 tm9sf4,LOC107681873,LOC107690854 coding downstream 82469 22001639 ~ 22024092 (-)
pofut1 pofut1,LOC107690856,LOC107559483 coding downstream 199752 21899814 ~ 21906809 (-)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485,LOC106572821 coding downstream 209034 21881936 ~ 21897527 (-)
gata5 gata5,LOC107681871,LOC107747495,LOC107690861,LOC107559469 coding upstream 51777 22159793 ~ 22168445 (-)
LOC111194118 NA coding upstream 224978 22332994 ~ 22337950 (-)
LOC103041770 NA coding upstream 262037 22370053 ~ 22372717 (-)
LOC103039708 sdcb1,LOC108435221,LOC104919459,LOC106572119 coding upstream 701295 22809311 ~ 22837730 (-)
LOC103038563 NA coding upstream 751657 22859673 ~ 22890067 (-)
LOC111194113 NA non-coding downstream 39281 22063954 ~ 22067280 (-)
G133706 NA non-coding downstream 79264 22025992 ~ 22027297 (-)
G133697 NA non-coding downstream 131470 21973783 ~ 21975091 (-)
G133686 NA non-coding downstream 239453 21861620 ~ 21867108 (-)
G133618 NA non-coding downstream 458396 21645342 ~ 21648165 (-)
LOC111194116 NA non-coding upstream 11273 22119289 ~ 22148162 (-)
G133772 NA non-coding upstream 172524 22280540 ~ 22282283 (-)
G133773 NA non-coding upstream 213284 22321300 ~ 22331156 (-)
G133779 NA non-coding upstream 239757 22347773 ~ 22348033 (-)
G133808 NA non-coding upstream 304521 22412537 ~ 22418169 (-)
LOC103040989 LOC108438207,LOC108276489 other downstream 2794517 19198350 ~ 19312044 (-)
G133109 NA other downstream 3117564 18969635 ~ 18988997 (-)
LOC111194101 NA other downstream 3128372 18976472 ~ 18978189 (-)
col24a1 col24a1,LOC107655744,LOC107709510,LOC107660294 other downstream 3463865 18444933 ~ 18642696 (-)
LOC103045666 LOC103045666,LOC108425511,LOC107707041,LOC106565412 other downstream 4610039 17482375 ~ 17496522 (-)
LOC103040235 fkbp1ab,fkbp1a,LOC108435222,LOC107707744,LOC105013763,LOC100705189,LOC101476936,LOC107657066,LOC103384692,LOC107747971 other upstream 731381 22839397 ~ 22847911 (-)
LOC103038244 NA other upstream 782630 22890646 ~ 22901632 (-)
LOC103034468 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC107395067,LOC108435227 other upstream 801805 22909821 ~ 22916384 (-)
G134093 prim1,LOC107741309 other upstream 1516265 23624281 ~ 23631155 (-)
G134312 LOC108436342 other upstream 2164728 24272744 ~ 24273069 (-)

Expression


Co-expression Network