LOC111194084


Basic Information

Item Value
gene id LOC111194084
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11901587 ~ 11914654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650887.1
TGGAGAGGCGCGTGAGTGTGCTTTCCCGCTGACTGACTTCAGGAGAAGAtaggagagaaaaacagagaaaaaacaggttaaaagttaaaaaaaacgtaaatacAGCTGATTTAACAGCTTTTATAACTTGTCGGTGAACAGAAAACGCAAGGGGGAAAGCTTTTCGTCGAAGAACGACGAGTTTATTACAATGTTTGCACTGGTTTCTTGATCGGATGATCAATTTGGACCAATCCCTTGATGGAGGGTTTCCTTCGTTCCGTGGACAACCTTGAGCTCTAGATATCAACAAGAGCTGGGGTGGCATACAGGGTTGAATGGGACATTTTAGCAAGGAGATCATTGCAAGGGACGCAACTGAGGAGCAGCTTGGAAGAGGACGTGAAATTAAAGTGTCTGCCTCTCCGTCCTCCTCCGTGCTGTCCCCCTCGCTGGTGGCCGTCCGGCTCTGCAGCTCCAGCAGGGACTCGGGCGAGAGGG
>XR_002650888.1
TGGAGAGGCGCGTGAGTGTGCTTTCCCGCTGACTGACTTCAGGAGAAGAtaggagagaaaaacagagaaaaaacaggttaaaagttaaaaaaaacgtaaatacAGCTGATTTAACAGCTTTTATAACTTGTCGGTGAACAGAAAACGCAAGGGGGAAAGCTTTTCGTCGAAGAACGACGAGTTTATTACAATGTTTGCACTGGTTTCTTGATCGGATGATCAATTTGGACCAATCCCTTGATGGAGGGTTTCCTTCGTTCCGTGGACAACCTTGAGCTCTAGATATCAACAAGAGCTGGGGTGGCATACAGGGTTGAATGGGACATTTTAGCAAGGAGATCATTGCAAGGGACGCAACTGAGGAGCAGCTTGGAAGAGGACGTGAAATTAAAGGAATATAGCCACAGGTAAAACTCACCGTTTGGAAGCCCAGGTGCATGTCAGTTGGGTCCAGCAGGCTCCGATCTCGGCGTGCCCG

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022414 reproductive process biological_process
GO:0003006 developmental process involved in reproduction biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650887.1 True 480 lncRNA 0.49 4 11906698 11914654
XR_002650888.1 False 478 lncRNA 0.46 4 11901587 11914654

Neighbor

gene id symbol gene type direction distance location
LOC103031154 NA coding downstream 113915 11754509 ~ 11787672 (-)
fam3a fam3a,LOC108425562,LOC102798212 coding downstream 251196 11636548 ~ 11650391 (-)
LOC103032719 LOC108425563 coding downstream 270782 11558112 ~ 11630805 (-)
LOC103032103 NA coding downstream 352707 11505249 ~ 11548880 (-)
LOC103031777 pa2g4b,LOC107737517,LOC107668344,LOC107593906,LOC107716155,LOC107591063 coding downstream 398879 11488554 ~ 11502708 (-)
LOC111194086 NA coding upstream 63543 11978197 ~ 11986633 (-)
LOC103027576 LOC108425492 coding upstream 247217 12161871 ~ 12165183 (-)
LOC111194034 NA coding upstream 295731 12210385 ~ 12218379 (-)
LOC111194017 NA coding upstream 305810 12220464 ~ 12224256 (-)
pfdn4 pfdn4,LOC107758785,LOC107697845,LOC107664135 coding upstream 312264 12226918 ~ 12232613 (-)
G131468 NA non-coding downstream 221766 11676388 ~ 11679821 (-)
G131462 NA non-coding downstream 254596 11646432 ~ 11646991 (-)
G131448 NA non-coding downstream 265531 11632712 ~ 11636056 (-)
LOC103030304 NA non-coding downstream 415874 11435432 ~ 11485713 (-)
LOC111194081 NA non-coding downstream 493956 11251884 ~ 11407631 (-)
G131546 LOC107697826 non-coding upstream 7756 11922410 ~ 11934218 (-)
G131557 NA non-coding upstream 41248 11955902 ~ 11957055 (-)
G131615 NA non-coding upstream 331150 12245804 ~ 12246828 (-)
G131612 NA non-coding upstream 331938 12246592 ~ 12248815 (-)
LOC111194089 NA non-coding upstream 402626 12317280 ~ 12318721 (-)
LOC103034324 casp9,LOC107737696,LOC107673102 other downstream 97118 11789303 ~ 11804469 (-)
LOC111194079 rbms2b,LOC108425569,LOC108275993,LOC107668341,LOC107673067,LOC107716168 other downstream 715158 11131486 ~ 11186429 (-)
pkig NA other downstream 873430 10976674 ~ 11028157 (-)
LOC111194083 NA other downstream 1152903 10724304 ~ 10748684 (-)
G131211 NA other downstream 1157688 10740739 ~ 10743899 (-)
pifo pifo other upstream 1362860 13277514 ~ 13330437 (-)
LOC111194036 camta1,LOC108276464 other upstream 2350214 14264868 ~ 14547195 (-)
LOC103031185 LOC103031185,LOC108434181,LOC105898970 other upstream 3662580 15577234 ~ 15597953 (-)
agrn agrn other upstream 3900250 15814904 ~ 16178437 (-)
G132467 NA other upstream 4431385 16346039 ~ 16351732 (-)

Expression


Co-expression Network