LOC103034324 (casp9,LOC107737696,LOC107673102)


Basic Information

Item Value
gene id LOC103034324
gene name casp9,LOC107737696,LOC107673102
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11789303 ~ 11804469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU177853
tttactacaactttactactgtacacaacacaagccttatgttcaccattcCCACTTCTCTACTGGGCTTGAAGGAATTTGGGATTAACCATCACACTCTGGAGCAAAGCCGAAAatgaccatccagactgttatcagtttAGGTTCAAAAAGCCAGGGTTGGTAATGGTATTGGCATGTGTCAGTATGCTTTTCTGATGCAGCATTTTCTATTTCCAAAAGAtcatctttatctatctttactCTACAGAGATTTCAAATCTGGATTATAATCACCTGTTAAAATCACCTTTTTGAAACCAGTACAAGTCTTAAATTGCTCTTGTTCATTTTTTGGAAGGTGTTGCAGGGCTGAAATGAAggaattacattaattaataataaaataaaataataaactaatttaagtTGAACAGATAGAACATGAACTATCTTGGGTTCATAATCTCTGTAAGCCACATACATAAACACTGCAACATAGTGTTTTTAGGaaacctgtatttttttttatgtaacattGCATTATTTTGAATAATCTCTGATGTTCAGGCAAGTCACAATCGATTCCCTGGAGCAGTGCATGGTGTGGATGGTCCATCTGTTCCTGTTCAGATAATCACAAACTACCTCAATGGCCAGAACTGTTCCTCTCTGCAGGGCAAGCCCAAGGTCTTCTTCATACAAGcatgtggaggagATCAGAGGGATATTGGTTTTGAAGTGTCTCCAGATGAGGTGCAGCCCCTTGCAGGGGGAATTGATGACCAGCCAGACGCCATTCCCACATCGTCCAGTAGCGATTCGCTCAGCTTATCTGATGAAATTGATGCCAGGGCCACTCTACCCACGCCCAGTGATATTCTAGTGTCTTACTCCACTTTTCCAGGATATGTGTCATGGAGAGATACGCTCACAGGGTCTTGGTACGTGGAGACGCTGGATCGCGTCCTGGAGGAGAATGCTGCCACTGATGACCTCGTCACTATGTTAATGATGGTGAACAATGAAGTGTCTCAGATATCCGCTAAAGGCCTCTACAAACAGATGCCTGGGTCCTTCAACTTCCTTCGCAAACATCTCTACTTTCAAGCGCCGGCCACATAAGATGCTGAAGTTGAAACAAGACAACACAAGACACTGATTTACAATGAtagaattttaaaattattgGAAGACAGCAGAATCAACATGCAGGGATGTGGGTTACTTTTTAGTATGTGGCTAATCAATGTACAATAAAGACAGGATCACTGTCTGTAGAGGCACCTGCCATTGtggtttggaccaaaaaaaggacaggattagtttctcagggggtcttgaggtaattttctcttttacggGGGagtctctgtgattttattcccgtccagaacaaccatgtatgtgttttgctACTACTGtgtttcgctgaactccgtggtcctccggtaattttagttctGTCCGGATGGACAcatctgagtttcgtcacctcacgtttaataaaacagctatttgtccactgccgcacactgtaatacactttgggcacatgtttccacggagatctacgtcaaaaacacaacagcgagtggaaatggaggagctactgagcgctgcaatgtcatgtgaccgagaaagcctaaaaaaaaaaaaaaactcactgatcctcctgttttttcagttacagtccggatgcaggagttttatcactgaatagacgtgtgaaatattttacacagacgtccccctgagaaactaatcccgaccagatagggcttaagtgtATACGATGTACCAAAATCATTAACCGTGGTTCAAACTTTGGTCTAGACTTCAAGGTGTGTATGAATTATCAGTgtgtcagtgatttttttttttgatagttttgagaaaaactgaaaacttGAGAAAATGATAGCCATTTAAGATGATGTACTTCAATTCAAATTAAACTGTGAC
>XM_022676743.1
CAGATTTTTAAGTGGGTATTCTCGCCTGTACAGACTCTGTGGTGTTGTTAGGCGTGACATAAACAAGGAAGCATGGAGCCCAGACACAGGAAGATCCTCCAGCAgaacagagctcacctggtgaAGACCTTAGATCCTTCAGGTGTCCTCGATGGACTCTTGTCAAGAGGCATCTTCAGTCAGGACATGATAGATGAGATAAAGAGCTCTGGGGCCAGACGTACTCAGGCCAGGCAGCTGGTGAAGGACCTGGAGACGAGAGGCAGTCAAGCTTTCCCAGCTTTTCTGGAGTGTCTTCATGAAACCGGCCAATCCAGCCTGGCGGAGCACCTGGAGAGTGGAAATCCTCTACCTGTACCTGCTCCCCTCCCTGTGCAGCCCACTGTAATCCCTCTCCCTGTCACCAATCCTGAAAACCCCGATCGAGCTGATGCTCCTCACAAGCTGGTGCCACTAAAACCACCCAGCCTGTCTGTGGATTTACTTCCCAGCCCATGTAAGTATAAAAAACAGAGAAGGCTTACTTCTGATGTTCAGGCAAGTCACAATCGATTCCCTGGAGCAGTGCATGGTGTGGATGGTCCATCTGTTCCTGTTCAGATAATCACAAACTACCTCAATGGCCAGAACTGTTCCTCTCTGCAGGGCAAGCCCAAGGTCTTCTTCATACAAGcatgtggaggagATCAGAGGGATATTGGTTTTGAAGTGTCTCCAGATGAGGTGCAGCCCCTTGCAGGGGGAATTGATGACCAGCCAGACGCCATTCCCACATCGTCCAGTAGCGATTCGCTCAGCTTATCTGATGAAATTGATGCCAGGGCCACTCTACCCACGCCCAGTGATATTCTAGTGTCTTACTCCACTTTTCCAGGATATGTGTCATGGAGAGATACGCTCACAGGGTCTTGGTACGTGGAGACGCTGGATCGCGTCCTGGAGGAGAATGCTGCCACTGATGACCTCGTCACTATGTTAATGATGGTGAACAATGAAGTGTCTCAGATATCCGCTAAAGGCCTCTACAAACAGATGCCTGGGTCCTTCAACTTCCTTCGCAAACATCTCTACTTTCAAGCGCCGGCCACATAAGATGCTGAAGTTGAAACAAGACAACACAAGACACTGATTTACAATGAtagaattttaaaattattgGAAGACAGCAGAATCAACATGCAGGGATGTGGGTTACTTTTTAGTATGTGGCTAATCAATGTACAATAAAGACAGGATCACTGTCTGTAGAGGCACCTGCCATTGtggtttggaccaaaaaaaggacaggattagtttctcagggggtcttgaggtaattttctcttttacggGGGagtctctgtgattttattcccgtccagaacaaccatgtatgtgttttgctACTACTGtgtttcgctgaactccgtggtcctccggtaattttagttctGTCCGGATGGACAcatctgagtttcgtcacctcacgtttaataaaacagctatttgtccactgccgcacactgtaatacactttgggcacatgtttccacggagatctacgtcaaaaacacaacagcgagtggaaatggaggagctactgagcgctgcaatgtcatgtgaccgagaaagcctaaaaaaaaaaaaaaactcactgatcctcctgttttttcagttacagtccggatgcaggagttttatcactgaatagacgtgtgaaatattttacacagacgtccccctgagaaactaatcccgaccagatagggcttaagtgtATACGATGTACCAAAATCATTAACCGTGGTTCAAACTTTGGTCTAGACTTCAAGGTGTGTATGAATTATCAGTgtgtcagtgatttttttttttgatagttttgagaaaaactgaaaacttGAGAAAATGATAGCCATTTAAGATGATGTACTTCAATTCAAATTAAACTGTGACTGTGGGTTTA

Function

symbol description
casp9 Predicted to enable cysteine-type endopeptidase activity involved in apoptotic signaling pathway and cysteine-type endopeptidase activity involved in execution phase of apoptosis. Acts upstream of or within several processes, including positive regulation of apoptotic process; regulation of collateral sprouting in absence of injury; and renal filtration. Predicted to be active in cytoplasm. Is expressed in gut; muscle cell; nervous system; and pharyngeal arch. Human ortholog(s) of this gene implicated in several diseases, including Parkinson's disease; colorectal cancer; lung non-small cell carcinoma; pancreatic cancer; and type 2 diabetes mellitus. Orthologous to human CASP9 (caspase 9).

NR:

description
PREDICTED: caspase-9 isoform X2

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177853 True 1944 lncRNA 0.41 4 11789313 11795846
XM_022676743.1 False 1942 mRNA 0.46 8 11789303 11804469

Neighbor

gene id symbol gene type direction distance location
LOC103031154 NA coding downstream 1631 11754509 ~ 11787672 (-)
fam3a fam3a,LOC108425562,LOC102798212 coding downstream 138912 11636548 ~ 11650391 (-)
LOC103032719 LOC108425563 coding downstream 158498 11558112 ~ 11630805 (-)
LOC103032103 NA coding downstream 240423 11505249 ~ 11548880 (-)
LOC103031777 pa2g4b,LOC107737517,LOC107668344,LOC107593906,LOC107716155,LOC107591063 coding downstream 286595 11488554 ~ 11502708 (-)
LOC111194086 NA coding upstream 173728 11978197 ~ 11986633 (-)
LOC103027576 LOC108425492 coding upstream 357402 12161871 ~ 12165183 (-)
LOC111194034 NA coding upstream 405916 12210385 ~ 12218379 (-)
LOC111194017 NA coding upstream 415995 12220464 ~ 12224256 (-)
pfdn4 pfdn4,LOC107758785,LOC107697845,LOC107664135 coding upstream 422449 12226918 ~ 12232613 (-)
G131468 NA non-coding downstream 109482 11676388 ~ 11679821 (-)
G131462 NA non-coding downstream 142312 11646432 ~ 11646991 (-)
G131448 NA non-coding downstream 153247 11632712 ~ 11636056 (-)
LOC103030304 NA non-coding downstream 303590 11435432 ~ 11485713 (-)
LOC111194081 NA non-coding downstream 381672 11251884 ~ 11407631 (-)
LOC111194084 NA non-coding upstream 97118 11901587 ~ 11914654 (-)
G131546 LOC107697826 non-coding upstream 117941 11922410 ~ 11934218 (-)
G131557 NA non-coding upstream 151433 11955902 ~ 11957055 (-)
G131615 NA non-coding upstream 441335 12245804 ~ 12246828 (-)
G131612 NA non-coding upstream 442123 12246592 ~ 12248815 (-)
LOC111194079 rbms2b,LOC108425569,LOC108275993,LOC107668341,LOC107673067,LOC107716168 other downstream 602874 11131486 ~ 11186429 (-)
pkig NA other downstream 761146 10976674 ~ 11028157 (-)
LOC111194083 NA other downstream 1040619 10724304 ~ 10748684 (-)
G131211 NA other downstream 1045404 10740739 ~ 10743899 (-)
G130892 LOC108433414 other downstream 1945815 9842339 ~ 9843488 (-)
pifo pifo other upstream 1473045 13277514 ~ 13330437 (-)
LOC111194036 camta1,LOC108276464 other upstream 2460399 14264868 ~ 14547195 (-)
LOC103031185 LOC103031185,LOC108434181,LOC105898970 other upstream 3772765 15577234 ~ 15597953 (-)
agrn agrn other upstream 4010435 15814904 ~ 16178437 (-)
G132467 NA other upstream 4541570 16346039 ~ 16351732 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_08962231_08968219 CASP9 coding CI01000001 null 8962231 ~ 8968227 (+)