CI01000001_08962231_08968219 (CASP9)


Basic Information

Item Value
gene id CI01000001_08962231_08968219
gene name CASP9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8962231 ~ 8968227 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_08962231_08968219.mRNA
ATGGTCCCTAATCACAGACTGATTCTTCAGCGGCACAGGCGTGATCTAGTCACGGCATTAAATCCTGCTGACATCTGCGATGGGCTTTTGTCAAAGGGGGTCTTCACCCAGGACATGATCGATGAAATACAGAGCAAGGAAACCAAACGAGACCAAGCCAGGCAACTGGTGACAGACTTGGAGACGAGAGGGAGTCAGGCTTTCCCAGCCTTCCTGGAGTGCCTGCGTGAGACTGGCCATCATGATCTCGTAGAGCTCCTTCAGAGTGGAGATAGTGCTCATCGGCCTCCTCCCATCCCAGTACAGCCTTCACTGATCCCTCTGCCTGTCCAAAATCCAAAATGTACTAAAAAGCCAGACAGACCTGATCTCACTCCTCCAGTAGCAGTCGTACCATTGAGACCATGCTACAAAATGGATGCCAGTCCGTGTGGGATCTGCCTGATTATAAACAATGTCGATTTTGAACCAGCCTCTGAACTAAAAGATCGAAAGGGGTCCAACATTGACTGTGACAAGATGGAGAATAGATTTAAAGCTCTCAACTTTGAGGTTATTGTGAAAAGGAACTTGAAACACATACATATAAAACATGCAATGTCATCTTTAGCAAAGAGAGATCATTCTGCGTATGACTGCTGTGTGGTGATCATCCTTTCACATGGTACTGAGGCAAACCACAATCGTTTCCCTGGAGCAGTTCATGGTGTTGATGGACAAGTTGTCCCAGTTCAGTTAATCACAAACTACCTCAATGGCCAGAACTGTCCTTCTCTGCAGGGCAAGCCCAAGCTGTTCTTCATCCAGGCCTGTGGCGGAGGTGAGAAGGACACAGGTTTTGAGGTTTCTCCAGATGAGGTGGAACCCTCTTTGGGTGGGATAGATGACCAGATGGACGCCATTCCCATGTCCTCCAGCAGTGACTCTCTCAGCACATCTGATGAACTTGATGCTCGGGCCACTTTGCCCACACCCAGCGACATCCTGGTGTCCTACTCAACCTTTCCAGGCTATGTCTCTTGGAGGGACACGGAGGCCGGCTCCTGGTATGTGGAGAATCTTGATCGTGTGCTTAAGGAGAATGTTGCCACAGATGATCTAGTGACCATGCTGATGATGGTACGTCTTTGTCCTGTAAAGCTTCTTAAAACTTTTTTTAAAGACAGAGGCAGCCACTAATAGATGCA

Function

symbol description
casp9 Predicted to enable cysteine-type endopeptidase activity involved in apoptotic signaling pathway and cysteine-type endopeptidase activity involved in execution phase of apoptosis. Acts upstream of or within several processes, including positive regulation of apoptotic process; regulation of collateral sprouting in absence of injury; and renal filtration. Predicted to be active in cytoplasm. Is expressed in gut; muscle cell; nervous system; and pharyngeal arch. Human ortholog(s) of this gene implicated in several diseases, including Parkinson's disease; colorectal cancer; lung non-small cell carcinoma; pancreatic cancer; and type 2 diabetes mellitus. Orthologous to human CASP9 (caspase 9).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_08962231_08968219.mRNA True 1187 mRNA 0.48 8 8962231 8968227

Neighbor

gene id symbol gene type direction distance location
CI01000001_08950041_08960737 NA coding upstream 1160 8950041 ~ 8961071 (+)
CI01000001_08934325_08940532 KLHL21 coding upstream 20877 8934007 ~ 8941354 (+)
CI01000001_08841482_08845223 OLFML3A coding upstream 116598 8840862 ~ 8845633 (+)
CI01000001_08785318_08810381 FAM132A coding upstream 151850 8785318 ~ 8810381 (+)
CI01000001_08748236_08757869 NCKAP5L coding upstream 204228 8748236 ~ 8758003 (+)
CI01000001_08971649_08984224 NA coding downstream 2318 8970545 ~ 8984239 (+)
CI01000001_09039724_09045754 NA coding downstream 71497 9039724 ~ 9046115 (+)
CI01000001_09059083_09101251 NA coding downstream 90637 9058864 ~ 9101352 (+)
CI01000001_09113045_09130978 NA coding downstream 144818 9113045 ~ 9131322 (+)
CI01000001_09132867_09145278 PA2G4.L, PA2G4-B, PA2G4B, PA2G4, PA2G4A coding downstream 164640 9132867 ~ 9145555 (+)
G17483 NA non-coding upstream 38487 8923496 ~ 8923744 (+)
G17479 NA non-coding upstream 42531 8919493 ~ 8919700 (+)
G17476 NA non-coding upstream 45829 8916173 ~ 8916402 (+)
G17475 NA non-coding upstream 46124 8915870 ~ 8916107 (+)
G17474 NA non-coding upstream 46630 8915278 ~ 8915601 (+)
G17495 NA non-coding downstream 42691 9010918 ~ 9011130 (+)
G17359 NA non-coding downstream 59884 9028111 ~ 9028519 (+)
G17385 NA non-coding downstream 60454 9028681 ~ 9028951 (+)
G17388 NA non-coding downstream 120315 9088542 ~ 9091385 (+)
G17507 NA non-coding downstream 175134 9143361 ~ 9143834 (+)
G17234 NA other upstream 929748 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1421645 7531541 ~ 7540586 (+)
G15995 NA other upstream 3247280 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 3672275 5279837 ~ 5287698 (+)
G15794 NA other upstream 3897527 5061218 ~ 5064704 (+)
G17353 NA other downstream 247795 9216022 ~ 9228859 (+)
G17354 NA other downstream 266236 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 450101 9435836 ~ 9436373 (+)
G18896 NA other downstream 1271673 10239900 ~ 10241492 (+)
G18873 NA other downstream 1288885 10223879 ~ 10260714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G155492 NA non-coding NC_048566.1 CM023220.2 51430866 ~ 51501997 (+)
mexican tetra (Astyanax mexicanus) LOC103034324 casp9,LOC107737696,LOC107673102 misc NC_035911.1 CM008314.1 11789303 ~ 11804469 (-)