CI01000001_08934325_08940532 (KLHL21)


Basic Information

Item Value
gene id CI01000001_08934325_08940532
gene name KLHL21
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8934007 ~ 8941354 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_08934325_08940532.mRNA
GTATTTATAGACCGGACACGATGAGCACTCTTTCTTAAGACCAACGGTTGCACACATTCGTCATAACCACATGAGATTTCATTCTAGAAGCTACGGTGTCCCTTTCCTTTCACAAATTTAAACACTTTGAGAAGATACACAGGTAGGCTGAAACTTCAATTTGGGCTTTTCTCTTTTTTAGGACTTGTTTTAGTTAGTCGACTGAAAAACTATTACTACAAACAACTAATAAAACTTCTGTTTTTCTGTTTAAAGATGAGTCCATCGTTCTGACTAGACATACAACAAGAGAAATACAGTAAGCTAAAAGGAACCGTTATGGAGAAACCAGTTTTACAAACGCAGCCCTCTATGCTGCCCTTCTTTGACGCGGCCCACGCCATCAACTTGCTCCGAGGCATCCACGAGCTCCGCGCAGAACGCAAGTTCTTCGATGTCACATTGTGTGCTGAAGGCAAGGAGTTTCACTGCCATCGAACTGTGCTAGCAGCTGCCAGCACATACTTCCGTGCTATGTTTGCCGGTACTCTTAGAGAGAGTGTCATGGACCGTGTGGTGCTACACGAAGTATCTGCTGAACTATTGGGCCTCCTGGTGGACTTTTGCTACACTGGTCGTGTGACCGTCACACATGACAACGTGGACCTTCTGCTCAAGACTGCAGACCTCTTTCAGTTCCCTTCTGTCAAAGAAGCGTGTTGCGCGTTCCTGGAGCAGAGACTTGATGTTTCCAACTGCTTGGAGATCCAGGACTTTGCAGAGGCTTATGCCTGCCGTGATTTGGCGGTTAGCGCCCGCCGTTTTGTGCTGAAGAACATTGTGGAGCTGGCGAAGAGCATGGACTTTGAGCGACTGTCGTGGAAGCGACTATTGGAGTTTGTGTCTGATGACGGACTGTGTGTGGATAAGGAAGAAACAGCATACCAGATTGCCGTACGCTGGGTCAAAGCCGACTTGCAGCACCGGTTGCATTACTGGCCTGAGTTGTTGCAGCAAGTACGACTGCCGTTTGTTCGCCGTTTCTACCTTCTGGCCCACGTGGAGAGCGATCCACTGGTCTACTTGTCACCTGCTTGTTTGAGGTTAGTCAGTGAGGCACGCAGCTTTCAGTCCTACGAATACGACCGCCATGACCGACCTGGTCATCGAATGCGCCCTCGTCCGTCCACCGGCCTGGCCGAAATTCTGGTGGTGGTGGGAGGATGTGATCAAGAGTGTGATGAGCTTGTTACTGTGGATTGTTACAACCCACAGACTGGACAGTGGAGATACTTAGCAGAATTCCCAGACCACCTTGGAGGTGGCTACAGTATAGCCGCCCTGGGCAACGACATTTACGTGACAGGTGGCTCGGATGGATCACGTCTCTATGATTGCGTTTGGCGATACAACTCCAGTGTGAATGAGTGGACTGAGGTCTCTCCCATGCTGAAAGCTAGAGAGTACCACAGCTCCTGCGTCCTGAAGGGTCAACTCTACGTGGTAGCCTCTGACAGCACAGAGCGCTATGACCATACCCTGGACTGCTGGGAGGCCCTTCCGCCCATGCCGCATCCCATGGATAACTGTTCTACCACAGCATGTAGGGGACGGCTCTACGCCATTGGATCCTTAACCGGAGAAGACACAATGGCAATTCAGTGCTACGATGCTGAAAGCAACCGCTGGTCACTAATCAGCAGTGGAGAACTGCCTCCGTGGTCCTTTGCCCCCAAATCGGTGACTCTAAATGGCATGATCTACTTTGTAAGGGATGATTCGGCAGAAGTTGATGTCTACAACCCACAGAAACACGAATGGGACAAGATTAGTCCCATGACACAAGTACATGTTGGAGGCAGTGTAGCAGCTTTGGGTGGTCGACTCTTTGTGTCCGGTGGCTATGACAACACCTTTGAGCTATCCGACGTGGTTGAGGTCTACGACCCCTCTACTCGATCGTGGGCCCCAGCTGGCCGGCTCCCTCAGCCCACTTTCTGGCATGGAAGTGTTAGCATATTCCGACAGTTCATGCCCCTTGTTCCAAGCACCTTCGAACCATTTGACATACCTGAGGCCAACGCCATCCACCTCCACAGACACCACCGCAACCAGGCACTTCACAACCACAATAACAATGTCAATCAGAACCTCAACCAAGAAGTCAATCAAGTGCATTGAGAACTTTTCGAAAAATGAGACTGAAGGTCATTCATTGTGACATCGCTACTAAGTGTTTTGCACTTTATCACATGTTCACCTCAACTGGGCAGTAAAGGGAGCTGGTGAACGGACTATCAATGTTTGTGTTATTTCTCCCAGTAACCCAGTGTTACTAAAGCTTTAATTGTTGCATGCATTTCTAATGCTGGCTGTGTTTACCTTGAACAGAGACTTGAGTGAAGTGACTCATGAAATAGTGCCTATCATGTTTGGCAAATTTCAAGCAATCCATGCCTTGGAAATTGCATGAAGGTTACACTAATTTTTCTTTTTTAATTTATTTTATAACTCAGCATGGACCTTCTAAAGTAATCCACAACATTGCAACTTCAAGTCCAAACCCATATAATATATAATATCATATAATATAATATTAATATAATAATATTACATAACATATAATTACCTAATGAGAAGTATATTTGCTCTTTTCAAAAATCATTTTGAGACCCCCAAGCATTCCAAAAGGTTAACGTTTGGATCACTTAGATTGTAGATGGATGTTTATAGCATAATATAGCATAGTATTCTGCAATGTGGAAAACAAATAGTTTTTTATATAAGCAGAGAAGAGTCAAAATGAAATATTTTGGAGAATCCAAGACTTCCCAAAAACATAATTTAGTTTGACAGATAAACTTAATATCTGGGCCCCAGAAAACCCTTTTTTTTATGTTCATCTTACTAGAACTACATGTGTCAGACAATCTAGCATGCATGCATTGGTCACATTTTTTGTGAATTTGTATTAGACTTGCTTTTTTAACTCATATTTTAATA

Function

symbol description
klhl21 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in chromosome passenger complex localization to spindle midzone; protein ubiquitination; and regulation of cytokinesis. Predicted to act upstream of or within cell division. Predicted to be located in polar microtubule. Predicted to be part of Cul3-RING ubiquitin ligase complex. Orthologous to human KLHL21 (kelch like family member 21).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10458 KLHL21; kelch-like protein 21

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_08934325_08940532.mRNA True 2982 mRNA 0.45 4 8934007 8941354

Neighbor

gene id symbol gene type direction distance location
CI01000001_08841482_08845223 OLFML3A coding upstream 88374 8840862 ~ 8845633 (+)
CI01000001_08785318_08810381 FAM132A coding upstream 123626 8785318 ~ 8810381 (+)
CI01000001_08748236_08757869 NCKAP5L coding upstream 176004 8748236 ~ 8758003 (+)
CI01000001_08721737_08727450 KANSL2 coding upstream 206237 8721737 ~ 8727787 (+)
CI01000001_08714618_08721009 NA coding upstream 212825 8714618 ~ 8721182 (+)
CI01000001_08950041_08960737 NA coding downstream 8687 8950041 ~ 8961071 (+)
CI01000001_08962231_08968219 CASP9 coding downstream 20877 8962231 ~ 8968227 (+)
CI01000001_08971649_08984224 NA coding downstream 29191 8970545 ~ 8984239 (+)
CI01000001_09039724_09045754 NA coding downstream 98370 9039724 ~ 9046115 (+)
CI01000001_09059083_09101251 NA coding downstream 117510 9058864 ~ 9101352 (+)
G17483 NA non-coding upstream 10263 8923496 ~ 8923744 (+)
G17479 NA non-coding upstream 14307 8919493 ~ 8919700 (+)
G17476 NA non-coding upstream 17605 8916173 ~ 8916402 (+)
G17475 NA non-coding upstream 17900 8915870 ~ 8916107 (+)
G17474 NA non-coding upstream 18406 8915278 ~ 8915601 (+)
G17495 NA non-coding downstream 69564 9010918 ~ 9011130 (+)
G17359 NA non-coding downstream 86757 9028111 ~ 9028519 (+)
G17385 NA non-coding downstream 87327 9028681 ~ 9028951 (+)
G17388 NA non-coding downstream 147188 9088542 ~ 9091385 (+)
G17507 NA non-coding downstream 202007 9143361 ~ 9143834 (+)
G17234 NA other upstream 901524 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1393421 7531541 ~ 7540586 (+)
G15995 NA other upstream 3219056 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 3644051 5279837 ~ 5287698 (+)
G15794 NA other upstream 3869303 5061218 ~ 5064704 (+)
G17353 NA other downstream 274668 9216022 ~ 9228859 (+)
G17354 NA other downstream 293109 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 476974 9435836 ~ 9436373 (+)
G18896 NA other downstream 1298546 10239900 ~ 10241492 (+)
G18873 NA other downstream 1315758 10223879 ~ 10260714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021696 klhl21 coding NC_007134.7 CM002907.2 24926407 ~ 24939148 (+)