CI01000001_08748236_08757869 (NCKAP5L)


Basic Information

Item Value
gene id CI01000001_08748236_08757869
gene name NCKAP5L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8748236 ~ 8758003 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_08748236_08757869.mRNA
GTAAAGACAATGTCAGAAGAGGCCCAAAATAGAGTAGATGAGGACTTTGAGTCTGAGGAGGGTGATCTGGAGTCCTATCTAGAGGAAGAGAGTAGCAGTGAGCTTCTGGAGCGAGTGAGAGAACTTCAAGCCGAGAACTCTGCCCTTTCATTAGCAAACGAGAGTCAGAGAGAAGCATATGAACGATGCTTGGATGAGGTGGCCAACCATGTTGTCCAAGCATTACTCAATCAAAAGGATCTCCGAGAGGAATGCATTAAGCTGAAAATGCGTGTGTTTGATTTGGAGAGGCAGAACAGAACACTGTGCGAGCTCCTGCAGGAGAAGTTGCACAGTCAATCATGTGTACATCAGCAGCAGCCAGGACCCTGTCTGGAGCACATCGGCGAGCTGCAGCACAGTGAATCTAACAAACTGATTGAGGCTCAGAGGAACGCACAGGCCAAGGGCAACAGCGAATCTGCACAAAATTGCATACCTGAGACCCAAGGCTCATCCACGTCCATGGAGGCCATGTCCCCATTCTTGAAAAAGAAAGCACACATTTTGGAGGTCCTCCGCAAGCTTGAAGAAACAGATCCCCTTCGGTACCATCGTTCCTCTGGCATTCCCTCGATCTGTGACTACAGCCAGGCTCTTGCCTCCAAGGAGGCTGTATTAGCCTGCAGAGACAATTCATCCAGGTGCAATGCACCCAAAGCACATTGTTCCCATTCCTGTCCAGATGTTTGCACACATCAGCATTTGAATGGAGGAGAGCACAGCAATGTAAAGTGTGGTAGTTGTAGCACATGCTTGATGCTGTCCAATAAAGATTCAGTCAGCTTAGCCAAGAGTAGCCACAACTGTTGCACTTCAGCCCCCATTACCATCGATAACCTCAATTTGGCTCGGCCCGATTTCCAAGAGAACATGGAAATGCAGAGCCTTGTGAAACCTGCCACAGGTACAAGCGAACTGTTTGTAAATAGGGCATCTGGAGATATGTCCATTCTTTCAGCAGAGCAAGGTCTTAACCTACCGAATGATCCCCACCCATTAGAAGCCCCTGAATCATACCCGAGATTGACCATTTCAGAAAGAGATCAGCCCAGAGGAGTCTCGGATCATGTGTCTGTAGAAACAAGAGACAAGAATAGGTTATCTGACCTTCTGCTTGAGTCTCAATCCAACAGGTCAAGCGGCAGCACCTGCAATGAGACAATTTGTGAAGATAGCACAATTGATGTGGCACTGCTGGACTCTGACTTGAAGCACTTAAATGCTGTAGTGCCACAAAGACTCGAAAAAGAAGAGTTTGCTACAAAAGAAGACACTGACTGTGTCTGTCGAGCCAACATAGCCACCTCAAAACTGCCTACTCTTGGACTCAAAGACAATTTACAAAATACACACTGTGAGATGGACAACATTGAACCAGTCCACAAAGGTCTGTTATTTTCTCCCAATGAAAATCATACTGCCTCAAAAGTACTGGATGATATCTCTGTCCCTGTGAAAGACATCCCATCTGACCCTCAGTCCATTAGATCGAAAGTTACGGTCAGCCCAAATCAAGTTTCCTGCCTTAGAGAGGTCAAGGCCTCGCCCTCCAAACTGCTCAAGTTCCTTAAAATACCCACTCTTGGAGAACGTACTGCAGTACCTGCTCCACCTCGTCTCAGTCCTCAGTTGACGCGTAGCTCAAAGATTCCTTGCCGGAGCAACAACTATGAGGTGCACAATTCGCCCGTAGCCACGCGAAAAGCCACCACGACAGAGAGGCAAAGACAGCTGCCCCCTTCTAAATCAGAGTCACACTCTGCTCCAACTTCTCCACCCCAACCTGATGATGTTCCTGCACCATTGCCAAAAGAACTTGGCTGTGGTATCCCTAAAACAAGTCGAGTAGCCAAGCCTACACAAAGTACTCATGTTCAAAAGACCCCTCAGAAAATTCCACACTACGAAAACGTCTCCGATATCTCCAAAACGTGTGGTACCGATGTATCCCAGCTGCTTGGAGAAGTGAGCTCATCTCTTCAAAATTCCAGCCCGGCTAATGAAGGTGCGAAAGGAAAGCAGACAAAGTTTGGTATAGAGAGACCAACCAGTTTCAAGCAGAAGGACATCTCACCAGAGTCTGATTCTTCTGACCAAGAGGACAGCGCAGAGAGCCCGGTGTGGCATAAGCAAGTCAATCATCGCAGTCTGCCAAGTCAGTCATCATCCCAGAAGGCTCAGACTGGGATTAGCACAAGGTCCAGGAGCCAAGAGAAAAACGAAATGGTAGATAATGATTCACAGAGCTCAGAATCACCTTTTAAAAGGAACGACCCACCGCCTGTTCCTAAGAAATCAGGGATTGGTAGACATTCAGGTGAATCAAGTCATTCTTTTAAAGAACGACTGGCTGCACTTGGCAAGTTGAGGAACCCGGAGGAGTACACAGCTTGTCCTCCACTTGCAGAGAAGAAAGAAATTCATACTGCTGCAAGCATACCAGCACGAACCACCGATAAAAGCAAAACTGCTGACAGAAACTCTGATTGTAAATCAGGAGAATATAGACTTCCTAAAAATTCAGATTCCATTGAGGATAAATCATACCATTCAGGTCATCTTGATGGTGCTGTTTCGAAACAACAAGGAGCCTTTCAGCATGTTGAGCAAACAGCCAGGTCTCTTCCATCTAGCACATTAGTCTCCAAACTTGAACACGAATCCTCTAGAACATTCTTAGCCAAGCAAGAAAGCCCAAAATCTAAGATGCATCCACCATCTACTAACCTAGAGGCTGCTCAGGCTTTGCGCAGCTATGCTAAGAATACAACACCCCATAGCCTTTCGTATAATGCAAAAAATGTCACTGGGCCCCAGAGTGGCAGCCCCAATAAAATCCCACTCAAATCACCAACTAAAACTGTGCCACCCTCTATGAACCGAGATGGGAAGCCTACTCAAGAGTTTCAGAGGTACATGTCCAAATCTGAGGACAGAAGCCATCTCAGGGCCAATAAGAAGAAGAATTCTTCCTATGGAGAGAGTCTTCCTCCTCCACCACCAAGGCCGGTAGAGTCCACTGAAGAAAAGAGACACTCTGCCCCCAGTCCACAGTCTTCTATCGAGCAGAAGGTCATGAAGGGCATTGAGGAAAATATGTTGAAACTGCAGGAGCAAGATAAAGGGCAAATGGCTGAGGTCAAGCAAAAGGCTTCCAATGGAATCGCCAGCTGGTTTGGTCTGAGAAAAAGCAAGCTTCCAGCTCTTAGCCGTAAACCAGAAACATCGAAAATGAAAGATGATAAGAGAGAATGGAAGCTCAATATATCCTCGGTGGGCAAGGATTCCAAGGGGGCTGCAAAGAAAGAGAGTGAGAGTCTAAACATTTCGATGTTGATTGAGAAGGCAGAGGGCTTGCATAAAGCTCTTGAAGAAGAACGGGCTTATGTGAATGGAGTGGCCTTGGACCGACAAGGAAAGGGACATTCCTGTGAGGTGGTGATGGACCAAGCCCAAGGCCAGCTGTCTGTGATGTACAGAGGAGTGCCATCTGACAACTTCATGCAGCAACTGCTAAACCGCGTTGATGGGAAGGACACTGGTGGCATCAGTATGGCACATCGACGCCTCTCGTTTGACTGTAAATCCAGACCTGTATTCAGTCACCAGAGCGCTGGCATTGCTAGTCAGACAAGAAGCAGTGATGACATGGAAAAGGTTTCTGCATTACTGAGTAAAGATGTCACATCAGATGAGAACCTGGCTGAGACAATTCATCATGAACATTTTGCAGGATCTGGAATCTCTACACACACCCTTGACAGTGGCATTGGCACCTTCCCACTTCCTGACTATAGTGCAAATGCTGGTTGCAAAAGCATTCCCAAAGGGAAGGCCCACGGGGAGTGTGACCCTTCTCATCTCCAGGGAAAACATGGCTCAGGGATGAAAATGTCCCATAAGGCCTGGACTTTGGAGAGAGAGTTGTCATGTTTAGAAGAGGATTATATGGGGGGCACTGATATCTGTGGAGCACCTATGAAATTGGGCCCCACAAAGAACTGGACTTTCCCAAACCTCAAAGCATCTGCAGAACCGTCTGAGGTTTATCTTGGCGTTGGAGACGGAGTGGAGCCACGCAACAAGACTAGTGATTCCGTAGCCAGCCGTGAAGGAGACCCGAGAAGTCTTCCTCAACCCGGACAGGCACGTAGAGGCAAAAGCCGTATTCCTGCAAACCCAGAGATGGTGAGGGACACTGGTTTGGAGTTGAGAAAAGCTCATGCCACATGTTACCCTCTGTACACGAAATACCCACGTTTCTATCCTGATGGTTGGAAGAAGGACTTTTACAATGTGTTTGTGCTTTTAGCCCATTATAACAACTCTATCATCTCATTCGTGTTCTCTGTTTTAAGTGGTAGCAAAAGTAGTGACGTTCAACTCATATTATTGTTAAATTACGTTTCAAGGATGAATCCAAGCTCATCGCGACAGTCTTCCAGTTTTTAATCTCACAGAATGTTCTGGTTCTCATGCAACATCAGTGCACACTCTCTTTGGTAACATTTGTGTAAAGTTATTGGAAAGTGAATGTTAATATATGTGATTTTCAATTAATTTAATATGCATATTTCATGAAAAGA

Function

symbol description
nckap5l Predicted to be involved in microtubule bundle formation and microtubule depolymerization. Predicted to be active in microtubule plus-end. Orthologous to human NCKAP5L (NCK associated protein 5 like).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_08748236_08757869.mRNA True 4628 mRNA 0.47 12 8748236 8758003

Neighbor

gene id symbol gene type direction distance location
CI01000001_08721737_08727450 KANSL2 coding upstream 20466 8721737 ~ 8727787 (+)
CI01000001_08714618_08721009 NA coding upstream 27054 8714618 ~ 8721182 (+)
CI01000001_08667814_08671039 NA coding upstream 76797 8667654 ~ 8671439 (+)
CI01000001_08540376_08551579 CLCNK coding upstream 196511 8539903 ~ 8551725 (+)
CI01000001_08444733_08450428 NA coding upstream 297312 8444733 ~ 8450924 (+)
CI01000001_08785318_08810381 FAM132A coding downstream 27315 8785318 ~ 8810381 (+)
CI01000001_08841482_08845223 OLFML3A coding downstream 82859 8840862 ~ 8845633 (+)
CI01000001_08934325_08940532 KLHL21 coding downstream 176004 8934007 ~ 8941354 (+)
CI01000001_08950041_08960737 NA coding downstream 192038 8950041 ~ 8961071 (+)
CI01000001_08962231_08968219 CASP9 coding downstream 204228 8962231 ~ 8968227 (+)
G17411 NA non-coding upstream 122735 8625283 ~ 8625501 (+)
G17408 NA non-coding upstream 124912 8623103 ~ 8623324 (+)
G17405 NA non-coding upstream 126396 8621511 ~ 8621840 (+)
G17403 NA non-coding upstream 128047 8619893 ~ 8620189 (+)
G17394 NA non-coding downstream 3466 8761469 ~ 8763538 (+)
G17422 NA non-coding downstream 15825 8773828 ~ 8774069 (+)
G17423 NA non-coding downstream 25902 8783905 ~ 8784187 (+)
G17439 NA non-coding downstream 64872 8822875 ~ 8823109 (+)
G17441 NA non-coding downstream 79120 8837123 ~ 8837636 (+)
G17234 NA other upstream 715753 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1207650 7531541 ~ 7540586 (+)
G15995 NA other upstream 3033285 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 3458280 5279837 ~ 5287698 (+)
G15794 NA other upstream 3683532 5061218 ~ 5064704 (+)
G17353 NA other downstream 458019 9216022 ~ 9228859 (+)
G17354 NA other downstream 476460 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 660325 9435836 ~ 9436373 (+)
G18896 NA other downstream 1481897 10239900 ~ 10241492 (+)
G18873 NA other downstream 1499109 10223879 ~ 10260714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021693 kansl2 coding NC_007134.7 CM002907.2 24598910 ~ 24661950 (+)