CI01000001_08721737_08727450 (KANSL2)


Basic Information

Item Value
gene id CI01000001_08721737_08727450
gene name KANSL2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8721737 ~ 8727787 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_08721737_08727450.mRNA
ATGAACAGGATTCGGATCCACGTGCTGCCATCCAGCAGAGGTCGAGTGACTCAAACTGCTCGCTCTCAAGAACCTCAAACCTGCTCCTTCACCCAGAGACCCTGTTCACAGCCTCGTCTGGAGGGCCTGGAGTTCTGCATCAAACACGTACTTGAGGATAAAAATGCTCCCTACAGGCAGTGCAGCTATGTTTCCAACAAGAATGGCAAGCGCTGCCCCAATGCAGCCCCAAAACCAGAGAAAAAAGAGGGGGTATCGTTCTGTGCTGAGCATGCACGCAGAAATGCTTTGGTTCAACAAGCTCAAATGCGGAAGGCATCTGCTTCTGGACCATCACCTGAAGTTTTACTCTCTCAGCTCAGCGGCTATAGCCGGCCAGAATCTGGAGCTCACAGTCAGGAGGGCCGAAGTGAAGCTAGTCGCATACTAGATGAAGAGAGTTGGAGTGAGGAGGAGCAGGATCCAATTGTTTTGGATCAGACGTGGAGAGGAGACCCTGACAGTGATGCTGAAAGTCTTGATAGTGACCACGAAGACCCTTTGAAGCATGCGGGTGTTTACACAGCAGAGGAAGTGGCGCTCATCACACGTGAAAAACTAATCAGACTTCAGTCCCTCTACATAGACCAATTCAAACGTCTGCAACACTTATTAAAAGAAAAGAAACGACGCTACCTGCATAGCCGCAAGATTGAGCATGAGACAATTGGGAGCAGCCTGTTAACAGGTCCGGAGGGGCTGTCCATGAAGGAACGAGAGAACCTGAAAAAATTAAAGGCTCTGCGGCGTTATCGGCGTCGTTATGGCGTGGAGGCATTGCTGCATCGCCAGCTCAGAGAGCGAAGACAAGCGATTACTGAGGGAGGCACGCCACAGGACGTTCCATGTGATCGGCCTGTGCACATGGGACAGTCGGAGGAGCCCCGCTGTCCTCTGCACCTGTCTCTGCCTCCACCCATGTACCAGCCTGAGCAGGAGTCTCTTGCCCCGGAGCAGCTGGCGTCTGCGCCCACAGACATACTTCTGAAGTATCCATCAAGTATCTACATGCCTGCTAACAGTGCTGCTCAAACATGTTCCCTGCTGTCCCCCATGGACATTCTGACCGGGGCGGAGCATGGAGATCTGGACGGATCTGCCCAAGATGCTGAGCTCTCAGAGAGAGACGAGGTGTCTGTGGAAGATGAGGTAATTATCACTGTTGCAATACGTAAACGATGCAACCTCATTGATATGTCTCTTCTTTGCAATGTAAGTGGACATTTAAGCACCAGAGCTACTGTCTTGTTTTACAGGTTGAATCTGAATTACTTGAAGCAGTTGGACAAGCAATTCCCACGCAGAATTCGTCAAAGGATTCTGACACGAAAACAACAGATGCCTTATCCTGAGCACCTTGTGACCTGATTTTCTCAGCTGTCGTACTGTTGATATTTCAAACAGTTCAAATATCTATTTAAAAGCCATATTCCGGCAGTCTGCTTTCATTGCAATTTCACCCAGCATTCTCATTACTTAAAATAGCACAATGGCTGATATAGATTGTAAGTGTCTTGTGAAACTAATGCACAGCAGTTACAGTGTATGCACATAGTTTGTGTTTTCTAAGGCAAAGGTGAGGTATGTGTTTAAGTACAGAAAGTCTCCATGCACCATCTCCACTTTTATCCAGTACATTTCTGGTTTCATATGATATTTATGACTCATACTGGGATTTGTTCACTAAA
>TU19458
TTGCTGAAGCCCCCATGGACATTCTGACCGGGGCGGAGCATGGAGATCTGGACGGATCTGCCCAAGATGCTGAGCTCTCAGAGAGAGACGAGGTGTCTGTGGAAGATGAGGTTGAATCTGAATTACTTGAAGCAGTTGGACAAGCAATTCCCACGCAGAATTCGTCAAAGGATTCTGACACGAAAACAACAGATGCCTTATCCTGAGCACCTTGTGACCTGATTTTCTCAGCTGTCGTACTGTTGATATTTCAAACAGTTCAAATATCTATTTAAAAGCCATATTCCGGCAGTCTGCTTTCATTGCAATTTCACCCAGCATTCTCATTACTTAAAATAGCACAATGGCTGATATAGATTGTAAGTGTCTTGTGAAACTAATGCACAGCAGTTACAGTGTATGCACATAGTTTGTGTTTTCTAAGGCAAAGGTGAGGTATGTGTTTAAGTACAGAAAGTCTCCATGCACCATCTCCACTTTTATCCAGTACATTTCTGGTTTCATATGATATTTATGACTCATACTGGGATTTGTTCACTAAAATAAACCTTTACATCTC

Function

symbol description
kansl2 Predicted to be located in nucleus. Predicted to be part of histone acetyltransferase complex. Is expressed in notochord. Orthologous to human KANSL2 (KAT8 regulatory NSL complex subunit 2).

GO:

id name namespace
GO:0046972 histone acetyltransferase activity (H4-K16 specific) molecular_function

KEGG:

id description
K18401 KANSL2; KAT8 regulatory NSL complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_08721737_08727450.mRNA False 1727 mRNA 0.48 8 8721737 8727770
TU19458 True 559 lncRNA 0.41 2 8727122 8727787

Neighbor

gene id symbol gene type direction distance location
CI01000001_08714618_08721009 NA coding upstream 555 8714618 ~ 8721182 (+)
CI01000001_08667814_08671039 NA coding upstream 50298 8667654 ~ 8671439 (+)
CI01000001_08540376_08551579 CLCNK coding upstream 170012 8539903 ~ 8551725 (+)
CI01000001_08444733_08450428 NA coding upstream 270813 8444733 ~ 8450924 (+)
CI01000001_08427984_08438912 NA coding upstream 282307 8427984 ~ 8439430 (+)
CI01000001_08748236_08757869 NCKAP5L coding downstream 20466 8748236 ~ 8758003 (+)
CI01000001_08785318_08810381 FAM132A coding downstream 57548 8785318 ~ 8810381 (+)
CI01000001_08841482_08845223 OLFML3A coding downstream 113092 8840862 ~ 8845633 (+)
CI01000001_08934325_08940532 KLHL21 coding downstream 206237 8934007 ~ 8941354 (+)
CI01000001_08950041_08960737 NA coding downstream 222271 8950041 ~ 8961071 (+)
G17411 NA non-coding upstream 96236 8625283 ~ 8625501 (+)
G17408 NA non-coding upstream 98413 8623103 ~ 8623324 (+)
G17405 NA non-coding upstream 99897 8621511 ~ 8621840 (+)
G17403 NA non-coding upstream 101548 8619893 ~ 8620189 (+)
G17402 NA non-coding upstream 104953 8616581 ~ 8616784 (+)
G17394 NA non-coding downstream 33699 8761469 ~ 8763538 (+)
G17422 NA non-coding downstream 46058 8773828 ~ 8774069 (+)
G17423 NA non-coding downstream 56135 8783905 ~ 8784187 (+)
G17439 NA non-coding downstream 95105 8822875 ~ 8823109 (+)
G17441 NA non-coding downstream 109353 8837123 ~ 8837636 (+)
G17234 NA other upstream 689254 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1181151 7531541 ~ 7540586 (+)
G15995 NA other upstream 3006786 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 3431781 5279837 ~ 5287698 (+)
G15794 NA other upstream 3657033 5061218 ~ 5064704 (+)
G17353 NA other downstream 488252 9216022 ~ 9228859 (+)
G17354 NA other downstream 506693 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 690558 9435836 ~ 9436373 (+)
G18896 NA other downstream 1512130 10239900 ~ 10241492 (+)
G18873 NA other downstream 1529342 10223879 ~ 10260714 (+)

Expression


Co-expression Network