CI01000012_05946986_05984551 (SLX4IP)


Basic Information

Item Value
gene id CI01000012_05946986_05984551
gene name SLX4IP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 5946986 ~ 5985959 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_05946986_05984551.mRNA
TCACACAGGGCCTGGAAATGCCAAGCGAACATGCCTCTCAAACACTGGGAACATTCCTAAAGTCTTCTGTAATGGCATATTTCGGATTTCGAAAGGAAAGTGTAGAAAAACAGAACAGCATGCGATAGTGTGGCGGCTCGTTTCCCCCTCAGTCTATCAAGCTTACGTCCCCGCGGCATCAATGCGGCCGCATCTAGCTTTGAGCTCAGGTGTTGACATGCTTCAGCGCCGGCTCCTCTCCATCCTCTTGCGGGTGGTCCGGGAAAGGCCTGTACCCCCATCTTTTTCTCTTTCTCTCTCAAAGTGTGGGAAATTCGCCGTGCTAGTGGATCTTCACATACTGCCCTTAGGCAGCCAAGACAATGCCAGCTGGTTCTCTCCAGAGCACAGGAAGGAAGTCGCCTCTCTGATAAGAGATGCATTGGAGCCGAGGGTGAGGCAGTTTCAAGAGGCCAGATACCAGAAGATCCAGCCCAAAACGAGGAAGGATTTCACCCTGACTGCCCCGCTTTGTCTTGAAGGCTCCCCAGATGAATGGTCACTAATAGCCGTGGGAGAGAGCTTTGCGAGTGCTGCACAGTGTACCAGGCTGACTCCTCTTGGCAGGCCCTGTGAGGAGGGCTTAAAGCAGTGCTGGCTGCCTGTGACCCAGCCCTATAGCCAGCACAAGTGCACTGCAGCAGATAGCCTTACCGCTGGAGAATGTGTTTACAAGGGCACAGAGGGAGTGATATCTCACTCAGTGGACGTTGAACAGAGTGATAAGACACACCGACCGCTCGGCCCAGGCTACAGTTACGCAGCCGGGTGTGATGTTCTTCCAGGAAAACCCCGCTCGGCCCTTCCATGTGGCGACCCCCGTGAAACACTCACACACATACGCACAATCACCCGGGAGCCCCACCCTGACCCATTCGTACAGCTGTCAGGCTCAGTCGGAGGTCACTGTCCGGATCGTTTTTATTTTGGAAAAAGACGACTGAAATATGTTCACTTAGTTGGCAACTCAGAACATGATTCAAAAGGCAGAGCTCAAATATTTGAGACTAAAACCGAGTCCACCCAAGCCAGGCTTGACAGCAGCTTACAGGGAAAATGTGGTTTGCTTATCATAGTAAACAAGTTCAGACTAAAGTTTGTATCTTTAGAGAAACTTTACTGTATATTATATTCTGCTAAATGGTTTCCTCATCACTTTAGCTACAGCTTCATCAGTAATTTTTTTTTGACCTTCACAGAGTTGCGTGTGTTTCCCGAGCGTGTTGTAGTGTGTGCCAGTCCTCCAGAGAATTCTGCACTTCCCAATGGAAATCTGAACCTGGATGTGTTCATGGAAGCAGGGCCCTTGTTTTTGCATTCCCCTGCTCAGGATGTGGTTCTCTGTGCTTGTATATGCTGCGAGGAAGGGTTAGCAGGAGCTTGCGGTGGTGCTCTTGCTATTTGGCAGATTGGAGGAGAGAGGCATCAGGAGAAAACAAAGAGGTGGATTTCTGGAGTGGTTATGGTTTATAGATACTCTTTATGTAAGTGCTCTGGTTTAGATGGCTGGAGTGTTGTTCTGACAGCTAACAAATCACTCCACCAACTTTCTGACCTAAATTTCTCTTCTTATCGCTCTTTCTCTTTCCCTTGTTCTTCTTTGAAGGCCAGCAGAGTACATGAGAGAATTGCTTCTTGGAGTGAACAAAGCCAGTCAAAGTATTTTTCTGGCTCTGGCGAGACCAAAGATCCACTACCCAGCTCCACAGCTACAAAAAGAGCTGTCCTTCAGAAGATTGCCAGGCAGGCTAACGTCCAACCCCGACAACGCCAAGATGATCAAGAGTCCAAATCAGCCCAATTGCAAGTGGATGAAGCACAGAAGGGGTCTGCCGAAACATGTCATCCTGTCCTCGTATTGTTCACGGCTGAGTCATTGGAGGAAGGAAAAGTTGTGTTGTCATCTAAATTAAGTAACGATAAAGAGGTCACTGAACCACATCTTGATGCTACCGGTCCGAAGAGACGTCCACGAACCCCAAGCAGCTCAGGAGAGGACGTTGACCATCAAAAGACAAAAAGATTGTGCCTTGGAGATCCTGCAGTGTTGAGTGATTCCAACAAGCTCTCTTCCGGCATTGCCGCACCAGACGTTTGCAGTTCCCAGCCTGAGATTTCACAGACTAACCAAAGCGGGCTGGCCATAAGTCTGAGAGGCCTATCCGTCAAGCCCGTATCCTCTGGCTCTTCTATTAGTTCCAGATTGGCCGCCAGAGAGGGAAGAAAGGGGGGCGAGCCCAGAACATCCCGATTACGCCGGCTCAAGAAGTCCTGAGGGGCGCAGCGGCATAGAACGAGAGGATATCTGACGCCACCACGATGGATGTTACAGTACACACTTCTACCGTAATGCTGTCTGTCAGCGGCGGTTGCACAAGAATTCACCACACACAGTCTTTACAGTATTTCCCTTTTGCCTTTTAAGTAAAAAACACATAAACTGCTCAATAGTCTGTATTAGATTACCAAGAACCTCTCAAATATTTGAATAGGTTTCATTAGCAGTACCTTAAAAGGAACTCATGCAAACAATAACTTTGCTCTAAACAAAAACACAAATGTAGTTCGCTTTTTTTTTTTTTTTTGCACAAGATTTGTATTTCAGACTAACGGGAGCCACCGAGCACACTGTGGCTTCAAGCCCAAATCTCTGGCTCCATTCGTCTGAAATCTCCACTCTTCCAGCTTCAGCTGAGCACATGATTGATTTCGCTGTGTTTTCACATACACCGCGCTCCTTAAGTGATCAGGGGTTTTCACCGTTGGAGCCGACTGCCGTCTCCCTGCGGTTATTATTTGTAAATGTGTTATTGCTTTTCATAACAGCTAAAAGTCTGCTGCGGGATGACTGACAACGTTATGGAACGCTGTAGTGCAGCTCATGTCCGATATTTGGCTAATCACGGCTGCAGTCGACATTGATGTAGTGCGTGATGGCAGGATGATTATATGTATGGACATAAATTCAAATCACATGCTCGTGCTTACAAATCACTTGATGTTTATGCCTTTTAGTATAATAGATATGTGTCATAAAAACGTTATCGGAATATACAAACATTGTGCTGTAATAATGGCATAACATTACAGTCAGAATGCTTCTGGTTTAGAGTTAGAACACATTTTAAAGTCATTTTACTGTATATTTTGATTTCTGTAATGCAATTCGAATCATTAAAAATGGCAACCATTTGTTCTTAATCAAACAATGTTCCAATTGAGATACTTCTGAACTAAATGTTCAAGGAATACTAAAAACTGAAATCATCACTGTTCATGCTATCCATTGCTATCTACAGTAGTCAACATTTAAAGTGGATCCAAACCTCCTTCTTAGGATAACTTAGTTCTTAGGACAACTTTGATGAACTTTTTTGATCCACTTCAAATGTTGACTACTATATTTACAATATAACTCATATTTTACTTTTACTTTATCATTACTAATGAAGACATTCAAATTTTTTGACTTTGAATTATAAAATGCTCAGAATGACAATATTGAAGATTAACAAATTTAAGCTTAAAGTTGCGATGTAACAGAAGTAGAAACATCTTTTCTTAAGTATTGTCGGAGTAACAGATTATTGAAAAAGAAAAAAAAATGTAGGTTGTGAACTTCTATTTATCAGTTGTTGATTTAATTTTGAGATCAGTGGGGTTTAAATTGACTGACATTTTGA

Function

symbol description
slx4ip Is expressed in eye; optic tectum; proliferative region; retina; and ventricular zone. Orthologous to human SLX4IP (SLX4 interacting protein).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_05946986_05984551.mRNA True 3722 mRNA 0.44 14 5946986 5985959

Neighbor

gene id symbol gene type direction distance location
CI01000012_05923216_05928055 SRD5A2B coding upstream 17800 5922385 ~ 5929186 (+)
CI01000012_05909453_05916000 MEMO1 coding upstream 30812 5909453 ~ 5916174 (+)
CI01000012_05856793_05862577 NA coding upstream 84344 5856316 ~ 5862642 (+)
CI01000012_05748899_05754466 ERLEC1 coding upstream 191732 5748899 ~ 5755254 (+)
CI01000012_05708007_05735678 MAP3K4 coding upstream 211001 5708007 ~ 5735985 (+)
CI01000012_06156417_06175135 NA coding downstream 168888 6154847 ~ 6175521 (+)
CI01000012_06182472_06192196 NA coding downstream 195048 6181007 ~ 6192613 (+)
CI01000012_06208439_06217101 BTBD3B, BTBD3 coding downstream 222480 6208439 ~ 6217914 (+)
CI01000012_06334114_06368535 SPTLC3 coding downstream 347390 6333349 ~ 6369091 (+)
CI01000012_06380300_06388370 ISM1 coding downstream 394341 6380300 ~ 6388991 (+)
G71668 NA non-coding upstream 25587 5921193 ~ 5921399 (+)
G71637 NA non-coding upstream 103432 5843064 ~ 5843554 (+)
G71623 NA non-coding upstream 132037 5813517 ~ 5816605 (+)
G71622 NA non-coding upstream 135759 5810037 ~ 5811227 (+)
G71619 NA non-coding upstream 140201 5806521 ~ 5806785 (+)
G72484 NA non-coding downstream 41735 6027694 ~ 6027911 (+)
G72499 NA non-coding downstream 71265 6057224 ~ 6057425 (+)
G72516 NA non-coding downstream 160238 6146197 ~ 6146540 (+)
G72548 NA non-coding downstream 199588 6185547 ~ 6185835 (+)
G72551 NA non-coding downstream 209671 6195630 ~ 6195856 (+)
G71548 NA other upstream 385553 5550493 ~ 5561433 (+)
G71221 NA other upstream 406530 5538525 ~ 5540456 (+)
G71218 NA other upstream 408602 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 1820144 7805248 ~ 7811902 (+)
G73578 NA other downstream 2380847 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 4235996 10223697 ~ 10236276 (+)
G75533 NA other downstream 5158858 11144817 ~ 11145739 (+)
G76385 NA other downstream 6644796 12630755 ~ 12675666 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location