CI01000012_07930029_07934648 (5NT1A, NT5C1BA)


Basic Information

Item Value
gene id CI01000012_07930029_07934648
gene name 5NT1A, NT5C1BA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7929292 ~ 7934881 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07930029_07934648.mRNA
AGTGCATTTACAAAGACACTTTTTTTATTATTATTTCTTTTGTTTTTGATTGAAACTGACTGGAAAAAAAAAATAAATAAAAAAAATAAAATTAAATGTAAATCGTTATGCGAGACACTTGGCCAGGACTGGTGACGTCACTGCGTCGTGCTGATGCTGAGAGGTATTCAACTACGTTACCGCAGCGAAGGAACGCCGGACGCAACAATTCAGTCCCCCGACACAACAACAATATGAGCAAACATGAAGGCACTGAGAGAGGAGCACAGTCCAACTCTGACAACAGTGAAGAAAAAGACTGGGCAGCTGTCAAAGCATTATTTGACAACGCGAAAACAGCGAAGAAGCCCCGTCCGCCCAAACCCAGCAACGCAGTAACCATTGCGGTGTCCTCGCGCACGCTGTTTAACATGGTGAAGGAAAGGAAGGTGTTTGAAGAGGAGGGACTGGAGAGGTACGTCGCGCTCCAGCTGGAGCTCGAAGATCAGCCATTTAACCCAGGTGTCTCGTTTCCTTTCGTTAAGGCTCTAATGAATGTAAATGCTCGTTTGAGGGAACTATACCCAGACAGTGAAGAGCTGTTTGATATTGTGCTGATGACTAATAACCATGCCCAGGTCGGAGTTCGTCTCATCAACAGCATCAATTACTATGATCTAACTATAGAAAGATTTTGCATGACGGGTGGAGAGAGTCCAATTGGTTACCTAAAGGCCTACATGACCAACCTCTACCTGTCCAAAGATTCAACGAAGGTACAAGAAGCTATCGAAGAAGGAATAGCTGCTGCCACAATGTTCACCTGTGACAGTGAGAACGAGCTCAGTGACACACAGCTACGTGTAGCCTTCGACGGAGATGCCGTTTTGTTTTCCGACGAGTCTGAGATTATCGTGAAGGAGCACGGATTGGACACCTTTTTTAAGCATGAGAAAGAGTTTGAGAACAAGCCTCTTGCTCAGGGCCCCCTGAAATGTTTCCTGGAAGCATTGGGGAAACTCCAACGCAAGTTCTATGCAAAAAACCAACGAATCGACTGCCCTATTCGCACTTACTTGGTCACAGCTCGAAGTGCCGCCAGCGCTGGGGCCCGCGTCCTGAAGACCCTACGAAGCTGGGGGTTGGAGGTAGATGAGGCCCTCTTTTTGGCTGGGGCTCCTAAGGGGCCTCTCCTTCATAAGATCAGGCCTCACATCTTCTTTGATGATCAGATGTTTCACATCGAGGGTGCCCAGGAGCTCGGAACAATCGCTGCTCACGTGCCCTATGGAATTGGACAGAAATATCATAAGGGGAAACGGATAGAAACAAGTGATGCAGAGGAAAAAATGAAATGATTTGATCTTTATCAAATGCAAATGTCAGAGTCCCATACTTTAGGTACCTCAAATTAATTTTATTTATTTTTGGTTGCTTCTGAGAAAATTTTGAATCTTGATCTCTACATATGGTTTAAGTTAAATGGATTGCTGGAAATATAAATACAAGGAAGCTACGGTTTTCAAAATGACCTACATAGTATATTATGTACTGTACTAATCTGTCAAAACTACTGTGAGGGTAAACTTTAGCCCTTTCTTTCTTTCTTTTCTTTTTTTTAAAGAGAATAATGTACAATTAGATGTGTTTACCAGCCATTATGCCTTGATCATTACAATTTTATATGATGTTTAATCAAGAGTTTAATTTAGAAAATTTAATTCTATCTCAGGGAGCATACATTGCAACTGTCTGTACTTGATTTATAGTGTCAGATTTTATTCTTCATTGTAAATTTAGCAGATTTGTATCTACATTTAGATGTTTTGTTTTAACTTCACTGCTTTACTGCTGTACTTCGATACTTGAACTCAATCCTCAGGCAGTTTCACTGTGTGGCCCACCACCAGTGCTCCTGACAGACCTTGCCACAATAATACACGATCTGCCCTGAGTGCCCTGAGAATGTATTACACCTCTGTGTTAACCATAAGGTGTAAATGTATGAAGTATATTTAATTTTGTTTTGTCCACAAAACAAAACAAATGTGTTGATCACTGTTATAAATGCTGGATTTATGCTGGATCAATTAAA

Function

symbol description
nt5c1ba Predicted to enable 5'-nucleotidase activity. Predicted to be involved in adenosine metabolic process. Predicted to act upstream of or within nucleotide metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human NT5C1B (5'-nucleotidase, cytosolic IB).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01081 E3.1.3.5; 5'-nucleotidase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07930029_07934648.mRNA True 2074 mRNA 0.42 6 7929292 7934881

Neighbor

gene id symbol gene type direction distance location
CI01000012_07925520_07928491 RDH14, RDH14A coding downstream 801 7925456 ~ 7928491 (-)
CI01000012_07813654_07814853 NA coding downstream 114439 7812900 ~ 7814853 (-)
CI01000012_07761466_07761786 NA coding downstream 167161 7761432 ~ 7762131 (-)
CI01000012_07716912_07750520 SOBPA coding downstream 178772 7716655 ~ 7750520 (-)
CI01000012_07705100_07707005 NA coding downstream 222065 7703949 ~ 7707227 (-)
CI01000012_07938822_07940632 NA coding upstream 3933 7938814 ~ 7941045 (-)
CI01000012_07956050_07959414 NA coding upstream 21106 7955987 ~ 7959414 (-)
CI01000012_08156754_08159438 OSR1 coding upstream 221188 8156069 ~ 8159438 (-)
CI01000012_08247043_08252830 NA coding upstream 311536 8246417 ~ 8252958 (-)
CI01000012_08376626_08388293 HIF1AA coding upstream 441737 8376618 ~ 8388293 (-)
G74504 NA non-coding downstream 22871 7906157 ~ 7906421 (-)
G74502 NA non-coding downstream 24899 7904148 ~ 7904393 (-)
G74501 NA non-coding downstream 25663 7903296 ~ 7903629 (-)
G74500 NA non-coding downstream 26111 7902980 ~ 7903181 (-)
G74498 NA non-coding downstream 30434 7898617 ~ 7898858 (-)
G74508 NA non-coding upstream 2321 7937202 ~ 7937438 (-)
G74546 NA non-coding upstream 110643 8045524 ~ 8045744 (-)
G74547 NA non-coding upstream 112427 8047308 ~ 8047528 (-)
G74548 NA non-coding upstream 115633 8050514 ~ 8050726 (-)
G74553 NA non-coding upstream 122286 8057167 ~ 8057394 (-)
CI01000012_07356934_07358497 NA other downstream 570747 7356863 ~ 7358612 (-)
G72629 NA other downstream 1781798 6147011 ~ 6147494 (-)
G72294 NA other downstream 2463435 5462840 ~ 5465857 (-)
CI01000012_05414096_05416676 TTC9 other downstream 2512512 5413369 ~ 5416780 (-)
G72204 NA other downstream 2627086 5293773 ~ 5302206 (-)
G74648 NA other upstream 329448 8264329 ~ 8265654 (-)
G74701 NA other upstream 432138 8367019 ~ 8367643 (-)
CI01000012_09068458_09070536 NA other upstream 1133025 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA other upstream 1136490 9071371 ~ 9073457 (-)
CI01000012_09082056_09083285 NA other upstream 1147855 9081877 ~ 9083489 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006106 nt5c1ba coding NC_007124.7 CM002897.2 32446169 ~ 32453932 (+)