CI01000012_08156754_08159438 (OSR1)


Basic Information

Item Value
gene id CI01000012_08156754_08159438
gene name OSR1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8156069 ~ 8159438 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_08156754_08159438.mRNA
GTATGTGGACTTCAAAGGGTTAAGGGTACGAGCCTGTTCTCGGGAGCGAGTCCTGATCTCCTCTAATGACCTCCTTCCTTATGAGACAAAGAGGAGTTATTGTGCTTTGTGTCTGTTCTCATCCAACCTGATTAAACAGTTGAGGCAGGGAAGTCCCTTCAGCCTAAACTTTCTGGAATCAGACATGGGCAGTAAGACGCTCCCAGCACCCGTGCCTCTTCATCCCTCTCTGCAGCTGGCGAACTATTCCTTCCTTCAGACCTCCAACGGGCTGCATTTGCCTGCCGACCACATGCCCAGCATCTACAGTTTCAGCGCCCTGCATGCCGTCCACCTGCACCAGTGGACTCTGGGCTACCCACCGTTCACTTTGCCACGCTGTACCTTCTCCAAGCTGCCTGGCCTGGTGGACGCCCGCTTCCCTCTACCCTCAATCCCTCTGTTCCCCCATCTCGTCCAGCCCACCAAGCAGGAATCCCCCGGGCCTGGTTCTGGAGCGTCCAGCAAAAGCAAACCTCGTTTTGACTTTGCCAACCTGGCAGCGGCCGCCACGCAGGACGACGCCCTGAAGGCGGAAGATCTGAGCACTAACAATGGGCACGTGCGCTCGCCCTCATTAGGCTGCCTGCTGGATGTGGCCAAGCTCTCCTCGCCGGAAAGAAAACCCAGCCGTGGACGACTCCCATCCAAGACGAAAAAGGAGTTTGTGTGCAAGTTCTGTGGCCGCCACTTCACTAAGTCCTACAACCTGTTGATCCACGAGCGCACGCACACAGACGAACGGCCGTACACTTGTGACATCTGCCACAAGGCCTTCAGGAGGCAGGACCACCTGAGAGACCACAGGTACATCCATTCCAAAGAGAAGCCATTTAAATGCCAGGAGTGTGGAAAGGGTTTCTGTCAGTCCAGAACTCTTGCTGTCCACAAAACATTACACATGCAGGTCAAGGAGCTCAAACCAGCCAAAATAAAGTGAGGGCATCTGCTTCAATCAATGGGGACACTATAAAACAAAACCTAGTGACTCCAGCCAATAACATTCCAAGGCCACAGAGACTCCATCCGAGGGCCGTGGACCTCTGCGCACGGCTTCACGCACCAAAGATGGATTAGGCCTGACCAAAGAGCTTCCTGAAAAGGCATCCTTCCATAACCTACAGCCACGATGCCTTAAAGTTTGACTGATACAAAGGAATGGAGAACCCGGATGAGAAGTCACGGAACTGAGCAGAAGCTTTAACATGGATTTAAGACAATCAAATTGATTGAGTTGTTTAAGAAAGAACAAATAAGCAAGAAGAGCGCCGACACCAAAGAGAACAGCTATAGTGAGATCTGTGATTTTAGTCTGCACTGCTCCATTCCGAATGATCTGTTGTTTTATTTTTGTACACAGTGATTTTTTTAGATATTGTTGACATTGTCGTTGATGAAGGCAGACTCTTCGGACCTATGCAGTTACTGAGAGCCCACCAAAGCTCTCGCATTTAAAACCCGAAGTCAGTCGAGCAGTCGTTTCTTCTCACCAAAGACACCTTCAATCATGTAATTCCTCCTTTTGTACAGATTCCTTTTTGTATAACTGATATTTGGCACTTTAATCTGATTATTGTTTATTTACATGTATCACTGGATTCCTTAAACTTATTTTTGAAAATAAA

Function

symbol description
osr1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in angioblast cell differentiation; negative regulation of transcription by RNA polymerase II; and pronephric nephron tubule development. Acts upstream of or within several processes, including nephron development; pectoral fin development; and regulation of nodal signaling pathway. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; germ ring; head; mesoderm; and vasculature. Orthologous to human OSR1 (odd-skipped related transcription factor 1).

GO:

id name namespace
GO:0035775 pronephric glomerulus morphogenesis biological_process

KEGG:

id description
K09215 OSR, ODD; odd-skipped

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_08156754_08159438.mRNA True 1664 mRNA 0.49 5 8156069 8159438

Neighbor

gene id symbol gene type direction distance location
CI01000012_07956050_07959414 NA coding downstream 196655 7955987 ~ 7959414 (-)
CI01000012_07938822_07940632 NA coding downstream 215024 7938814 ~ 7941045 (-)
CI01000012_07930029_07934648 5NT1A, NT5C1BA coding downstream 221188 7929292 ~ 7934881 (-)
CI01000012_07925520_07928491 RDH14, RDH14A coding downstream 227578 7925456 ~ 7928491 (-)
CI01000012_07813654_07814853 NA coding downstream 341216 7812900 ~ 7814853 (-)
CI01000012_08247043_08252830 NA coding upstream 86979 8246417 ~ 8252958 (-)
CI01000012_08376626_08388293 HIF1AA coding upstream 217180 8376618 ~ 8388293 (-)
CI01000012_08399430_08416750 PRKCHA coding upstream 238328 8397766 ~ 8417291 (-)
CI01000012_08423495_08432094 SLC38A6 coding upstream 263366 8422804 ~ 8432094 (-)
CI01000012_08445692_08459897 MNAT1 coding upstream 286220 8445658 ~ 8459897 (-)
G74606 NA non-coding downstream 3607 8152157 ~ 8152462 (-)
G74596 NA non-coding downstream 5199 8134632 ~ 8150870 (-)
G74593 NA non-coding downstream 24732 8130931 ~ 8131337 (-)
G74583 NA non-coding downstream 42705 8112758 ~ 8113364 (-)
G74576 NA non-coding downstream 57067 8098193 ~ 8099002 (-)
G74609 NA non-coding upstream 12409 8171847 ~ 8172067 (-)
G74612 NA non-coding upstream 29464 8188902 ~ 8189241 (-)
G74624 NA non-coding upstream 42951 8202389 ~ 8202603 (-)
G74627 NA non-coding upstream 45490 8204928 ~ 8205192 (-)
G74652 NA non-coding upstream 98874 8258312 ~ 8258539 (-)
CI01000012_07356934_07358497 NA other downstream 797524 7356863 ~ 7358612 (-)
G72629 NA other downstream 2008575 6147011 ~ 6147494 (-)
G72294 NA other downstream 2690212 5462840 ~ 5465857 (-)
CI01000012_05414096_05416676 TTC9 other downstream 2739289 5413369 ~ 5416780 (-)
G72204 NA other downstream 2853863 5293773 ~ 5302206 (-)
G74648 NA other upstream 104891 8264329 ~ 8265654 (-)
G74701 NA other upstream 207581 8367019 ~ 8367643 (-)
CI01000012_09068458_09070536 NA other upstream 908468 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA other upstream 911933 9071371 ~ 9073457 (-)
CI01000012_09082056_09083285 NA other upstream 923298 9081877 ~ 9083489 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location