CI01000012_08423495_08432094 (SLC38A6)


Basic Information

Item Value
gene id CI01000012_08423495_08432094
gene name SLC38A6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8422804 ~ 8432094 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_08423495_08432094.mRNA
GGTGTTCAGGTTAGAGGCGCGTCCTTCATGTCTTCTGCCTTTAATCTAATGAATGCTATCATGGGTAGTGGCATCCTGGGTCTCTCATATGCTATGGCCAATACAGGCATTATCGGATTCAGTATTCTGTTGCTCGTGGTCTCCAGTTTGGCTGTTTATTCTATCCATCTCCTGCTGCTCCTCTGTGACAAGACAGGCATCAACTCTTATGAAGCTCTTGGAGAGAAAGCCTTCAACAGACCTGGCAAGATTCTGGTGGCCTGTACTATTCTCATTCAGAACATTGGTGCCATGTCCAGCTACTTGTTCATCTTGAAGTCTGAAATGCCTGCTGCCATCACCGGCTTCATGAGCACAGAGACTTCTGGCATGTTTCCAAAGGAAAGAAAAGAGAAAGTATTCCAGAGTAAGAATGTAACGGTCATTATTTTATTAGCCGCTGTTCTGAGCTGTGGTTCGACTGTGCCCCGTCCCCACACAGCTGGTTTGCATTACAGAAAGTGGTTTGAGAATGGCGTTACCCTGTTGATTTTAGTCACTGTAATTGTAGTGTTGCCATTGGCTCTACTTCCAAAGATTGGTTTCCTGGGATACACCAGCAGTATTGCATTCCTCTTCATGTTGTTTTTTACTGTAGTGGTGGTGGTAAAAAAATGGTCCATTCCTTGTCCGCTGCCATTGAACTCCACTGTGAGCCTGAGCTTAAATACCTCCGAGTGCACCCCACAACTGTTTGTGATCTCTAGTAAGAGTGCTTATGCTGTCCCAACAATGGCTTTCTCCTTCCTGTGCCATACGGCGGTTTTACCCATTTATTGTGAGTTACACAGACCCACAAAGCGGAGAATGCAGAATGTGACAAATGTCAGCATCTCTCTTAGTTTCGTAGTGTATCTGATCTCTGCCCTTTTTGGATACCTCACCTTCTATAAACACGTGGAATCAGAGCTGTTGCTAGGATACGACACCTACCTACCGCGGGATGTTTTGGTGATGTCAGTGCGTCTTGCGATTCTATTGGCCGTTCTGCTCACTGTGCCGCTCATTCACTTCCCAGCACGTAAAGCGTTCTTGATGTTATGCGGGAGAGAGAGGGAGTTCTCCTGGCTCTCTCATTCACTTTCCTGTTTTTTCATCCTCACTCTTGTGCTGGTGCTCGCTATTTTCGTGCCTGACATCAGGAATGTCTTTGGTGTGGTCGGCGGTTTTACTGTTGGTCATTGGCCTGGTTGTGGGTGCGCTGAGCCTGTGTGTCATCATTGTCTCCTGGGTTCAAGGTTCTTGACCTTTGACATTATCATTATGGGACACGTTGCATTGCATGAGTTGTGAGCTCAACACATGCTGTCTTGGAGAAGAACCTTATTTTACAGGTTATACACCAGGCAGACTGTTTACTGGACCAAATGCTGCTTCAAGAAGGGAATCCCAATGAGATGAGCCAACTGTGCTCTTATGATACTCCTAATGTCCTCATAATGCTGTAATGACACTTGAATACTGAACACAGGCACAATCAAAATTCACAATATCCAGTAGAGCAATGAAATGGATAGTAATCTATTCTGAATGACAGCAGAGTTTGACAATCTTTGAATCAGACGGTTGCTGGGATCTGTAAAAAGACAGATGAAACCAATGAATTAAGCAGCTGTACTGCTGATTTTTCAATAACTGAATGTGGGTATTAGATTTATGCAGATATTTAATGAATTGGAAAATTGTGTCTGTCTGAAAAAAAAAAAAAAACAACAACTCTGGTTTAAAGATTTATCCTTTGTATGGATTTGATTTTTGAAGATTTTTCAAACATTTCAGGGTATTTCTTCACCAACACACTATCCAAAGATTTTCTGTGATGATTTAAGTTTAGAATGCAATTTTTTTTTCTTTCTATTTTAAATAAAGAAAAAATAAAAATAAATTGAAAATATATATTTTTTTGTGTTTGTTTTACCATTGCAACCCTGTTTATATGTCTTAAAGGACAATTTTGATGTATTTTTATGTAGAATTAAATAAA

Function

symbol description
slc38a6 Predicted to enable L-glutamine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and glutamine transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC38A6 (solute carrier family 38 member 6).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K14993 SLC38A6, SNAT6; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_08423495_08432094.mRNA True 2023 mRNA 0.41 15 8422804 8432094

Neighbor

gene id symbol gene type direction distance location
CI01000012_08399430_08416750 PRKCHA coding downstream 5513 8397766 ~ 8417291 (-)
CI01000012_08376626_08388293 HIF1AA coding downstream 34511 8376618 ~ 8388293 (-)
CI01000012_08247043_08252830 NA coding downstream 169846 8246417 ~ 8252958 (-)
CI01000012_08156754_08159438 OSR1 coding downstream 263366 8156069 ~ 8159438 (-)
CI01000012_07956050_07959414 NA coding downstream 463390 7955987 ~ 7959414 (-)
CI01000012_08445692_08459897 MNAT1 coding upstream 13564 8445658 ~ 8459897 (-)
CI01000012_08489570_08491016 SIX6, SIX6A, SIX6B, SIX6.L coding upstream 57004 8489098 ~ 8492326 (-)
CI01000012_08520569_08525168 PPM1AA, PPM1A coding upstream 88026 8520120 ~ 8525243 (-)
CI01000012_08532750_08542754 PCNXL4, PCNX4 coding upstream 100426 8532520 ~ 8545588 (-)
CI01000012_08553489_08572819 LRRC9 coding upstream 121395 8553489 ~ 8572819 (-)
G74733 NA non-coding downstream 4118 8418222 ~ 8418686 (-)
G74703 NA non-coding downstream 53395 8369098 ~ 8369409 (-)
G74702 NA non-coding downstream 53805 8368468 ~ 8368999 (-)
G74698 NA non-coding downstream 64030 8358548 ~ 8358774 (-)
G74695 NA non-coding downstream 65305 8356790 ~ 8357499 (-)
G74735 NA non-coding upstream 41957 8474051 ~ 8474327 (-)
G74748 NA non-coding upstream 118002 8550096 ~ 8550368 (-)
G74750 NA non-coding upstream 120345 8552439 ~ 8552889 (-)
G74767 NA non-coding upstream 179591 8611685 ~ 8612028 (-)
G74728 NA non-coding upstream 224632 8656726 ~ 8657411 (-)
G74701 NA other downstream 55161 8367019 ~ 8367643 (-)
G74648 NA other downstream 157150 8264329 ~ 8265654 (-)
CI01000012_07356934_07358497 NA other downstream 1064259 7356863 ~ 7358612 (-)
G72629 NA other downstream 2275310 6147011 ~ 6147494 (-)
G72294 NA other downstream 2956947 5462840 ~ 5465857 (-)
CI01000012_09068458_09070536 NA other upstream 635812 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA other upstream 639277 9071371 ~ 9073457 (-)
CI01000012_09082056_09083285 NA other upstream 650642 9081877 ~ 9083489 (-)
CI01000012_09400481_09401810 EIF4EBP2 other upstream 965982 9398076 ~ 9402378 (-)
G74982 NA other upstream 1143554 9575648 ~ 9576149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006098 slc38a6 coding NC_007124.7 CM002897.2 31687973 ~ 31707870 (+)