CI01000012_08553489_08572819 (LRRC9)


Basic Information

Item Value
gene id CI01000012_08553489_08572819
gene name LRRC9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8553489 ~ 8572819 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_08553489_08572819.mRNA
ATGACACAGAATGAAAAGCAGAGTTTAACTGCAGATGAAGAAATTATAAAAGAGCTGTGTCTGTCTAATGGACTCTGCTATGAGAAGGTGTGTCAGGAGGGGAGTGGAGAAACGGTTCTGGAGATGTTTTTCTCTGGGTTCCCATGCATGGTGGGACTTTCTCTCTTCCCCAGACTGTTCAGACTCACTATTGTAGGCCAAAGCATCAGCTCAATCCAGGGCCTGGAGTATTGTCCACTCCTCAGAGAATTATGGGTAGTGGAGTGCAAACTTAATGAGATCTCAGGCCTACATAACTGTGTGCATCTGCAAAAGTTATTTTTGTATGACAACAACATCCAGCAGATCTCAAATCTAGAGACGTTGGTCGACCTTCACGTTCTGTGGCTTAATAAGAACCAGATCACTGACATACAGGGACTGAATTCACTTGTAAACCTCGAGGAGTTGAATCTTGCTGATAATGCTATTGAGACTCTTGGTCATAGCCTGGATCCCAACATCAATCTCCAAAATCTAAACCTCTCAGGGAACAAAATCAGTTCCTTCAAGGAACTGACCCATCTGACTCGGCTGCAACGACTGAGGCACCTGAGTCTGAAGGACCCTCAATCTATTCCAAACCCGCTGTGTCTGCTCTATAATTACTACATACATGTTATATATCACATGCCACACCTGCAGTGCCTGGACACATATGACATTTCCAGCAAACATCTCAAAGACTTTGCAGAGTCTACAGTCATGAAGAAGATTATGTATTACACCATGCGGGTACGTTGTGCGGAAAGACAGTTTGATGAACTCAAAGCCAAGCTCAGGCAGCAGAGGAGAGACCAGATACAACTACCAGAGGAGAGAATACGAGTGCTAGCACGCATGCTCAGAAATCTGAAGTGTGAGCTGTCCCATGTGCAATGTTCTGGGAAGAAGTCAGGAGAACCTGAAGATTTGACCTCTGACCTTCGTCATGAGCAGAGACTGCAGCACAAACTGGATGCTCTTAAATGCCGACTGAAATTCTGGGAACGGCGTTTGGAGGAGGTAGTGTCATGTCACCAGCATAATGTAGCTTTGGCCTCAGATAGAAAGGAGATGATGGTGCACTTCCTGCTGTTGGAACTAGAAACCGTGGGGAACATTCGCTTTGAGGAGGGAAACACCAGCGAACCGTGGTTCACGTCCTGTTACGATCTTTTGCTGTCTCGTTTCTGTGTGTGGGATTATAAACCTCAGCACATCACTGGCATTAAGATCAATCGAATCATCCGTATTCATAACCGAGCCCTGCGGCAACGCTTCCAGGACAAAGTGCACTCTCTGATCTGCAGACAGGAGTCTTCACCCTTCTCACAGAACTATAAATGCTGCATGGAGTATCTGTTCTACGTGCCCGATCCAGAACATTCCTGTGAAAGTGATGAGATACTCCAAATCCCAGAAAATGGTTTTAAAACTGCTGATGCATATAAGGCGTTAGGCAGAGAGAGAGCCGTCCCCCTCTCTAACAGTGTGAGTGTGTCTGATCGACTGCGAATGGCATTCATGCAGAAGAAGAGCTGTTCAACTTCGGGAAGTAGCCCTGCAGACCCTCTTCCCTTCAGACACGGACAGTTGATCATTTCTAAAGTGTTCCTGGGCCGCAGTGCTGCAGTGAAGGAGGGTCGCCCAATAGATTGTCATCATTACCCCAAAGCAAACTCTGTCTATCTCAGTACTAGCTCTAAACAGCAAAATCAAACTGCACAAACAGACGTGCTGCGTCCCTCCAGCCTGCCAGACAGCTGCGACTGTAGACAGCAGCAGAAACTGTGGTACATTTTTGACCAGGAAATGGTAATGCCAGAGTACCTTGTGGACTTTGAATACATATCACAGGACACAACCCAGCCCTTTCTAGGCTCCCTGTCCAGTTCTCATACATCCCCCGCTGATGCTCCATCTGTGTCACGTGTTGAGCTGGACCTGGATGAGGAGGCATTAAATGTGGAACCCATCCTGAATCCCCACCCTAAAATGCTCAGCCTAGATGAGAAATCCATACTGATGGTGGCCAGAGCAAACATCCTCAGTCAGATCACAGTGCTGAATCTTCATGGCAACAGTCTGAATAAACTGCCTGAGATTTCTCGACTCACGGCTCTGAAGCATCTAACCCTTAGCTTCAACGAGTTCACTCATCTGGACGATATTTCACACATGCCAAATCTGGAGTATCTGGATGTTAGTTTTAACCATATTTCTTCTCTGGATGGTTTGCGTGGACTTGGTCGACTTATAGAACTGGATCTTCGCTGGAATCAGTTGACCCAAGTCAGGGATGACATGAACGTTTTGCGTAAACATGCCCCGGCCCTGCTTCGACTGGACACACGGCACAATCCTTGGCACAGGAATGAGTGTGTGCGGATGGTGGTTCTCGGCCGACTAAAGACTCTCACTCATTTGGATGATGTTTTAGTGATGGAGGAAGAAGCGGCTGCTGCTGTTCAAGTGGTTTCCCGATCTAGAATCAACCATGCATCTCTGATGACCCACTCTCGGACTGACAGTGAACGTCCCCGCAGTCTGAGTTTGCTCTCTACAGCACACCTGCTCACAAAGATCAGCCCGTCTCCATGGAAACACTCGCAAGAGCTTGAGTCAGGCTGGACCACCAAAATCACAGCGCTGAATCTTGATGGTCAGCGGTTGACCCGGCTCAGTAATCTAGATCGGCTGGTGAATCTTCGCTGGGCTTCTTTTGACGATAATGAATTAACCCGAATTGAGGGTCTGGAACACTGCCTGCTACTGGAGGAACTTTCCCTTAACAACAACAGTATCAGTAGACTTGAAGGTTTGTGTGCGATGCATCGTCTGACGCGTCTGAGCATTAACAGCAACCACCTACAGTGTTTAGACGGGGATGTATTAGACCGGCTACCCAACCTTCACTTCCTGTCTGTCGAGAACAACATCATCTCTTCTCTGCATGGACTCCAGAGGTCACGGTCCTTATTCGAGCTTTATGCCGGCAACAATGATATCAGCACCACCCGAGACATATACCACTTAAAGGCACTGTCTAGTTTAATTATTCTGGATCTGTACGGGAATCCCCTAGTGAACAAACTGGAGAACTACAGAATATACATGGTTTTCCATCTGCCATCTCTCAAAGCACTGGATGGAGTAGCCGTGGAAACGTGTGAATCAGAAACTGCTAAAGATGTGTTTGAAGGGCGACTCAATGCAGATATGGTGGCCGAGAAGCTGGGCCATTCCAACTACAGGGAACTGTCAGAGCTCAACCTGCAGTCCAGCTCAGTCAGGATGGTGGATCTCGTTCCTGCTGATTTGTTTGTTAATTTACGGAGTATTAATCTAGAACACAATAACCTCACCTCATTCAGCGGTCTGATCTTCCTGCCCAACATTAAGGTGTTGTCTCTGAGCTATAACCACATTGAGTCAATTCTGCAACGTCAAAAAGTTCAGAGTCACATGAGCAACAAACAGATTCTCTATCATAAAGTCAGTTCCAGTGGATATGGGCAGCTGAACAGCAGGCCCAGCAGGGAGGGATTAACTGGTGATAATCTGGAGCCTCTGATGTCCAGTTTGGAGGTTTTGCATTTGGGTCATAATGGCATATCCAACCTGATCAATCTACAGATCAGCCGGCTGACTAACCTCAGAGCACTGTTCCTACAAGGAAATGATATTAGTCAGGTAGATGGATTGGATGGTTTACGAAAACTACGTGAGTTGGTTCTGGATCGAAATCGAATTAAATCTTTGAGTGAGAACTCATTCAGTGGACAGGGAGTTCTGCTGGATTTGCACCTGGCAGAGAATCGCATCCGTGAACTAAACCACCTGCAGCCTCTCAAAGGGCTCCGGAGGCTGTTCTTAGACATGAACAAAATACAGGATATTTCAGAGCTGGAGAAACTGGATGTGCTCCCTTCTCTCATAGAACTGTCTGTAGTGGGCAATCCAGTGGCACGGCGATCACTGCACAGGTCGCCAGTGGTACTGCATCTGTCTACACTGCAGGTTCTGGATGGCATTACGGTCACACTGGAGGAACGAACCAGAGCAGAGCTTTTAAACAATGAAGCACAGATAAAAAGCAGAGAACAGTTGTCTCTCTCTTGCGTGGAGTTCAGAGTGATGTTAACTTCAGGCAGATCAGAGGATCTTCCGGCCACTACATGA

Function

symbol description
lrrc9 Orthologous to human LRRC9 (leucine rich repeat containing 9).

GO:

id name namespace
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_08553489_08572819.mRNA True 4203 mRNA 0.47 30 8553489 8572819

Neighbor

gene id symbol gene type direction distance location
CI01000012_08532750_08542754 PCNXL4, PCNX4 coding downstream 7901 8532520 ~ 8545588 (-)
CI01000012_08520569_08525168 PPM1AA, PPM1A coding downstream 28246 8520120 ~ 8525243 (-)
CI01000012_08489570_08491016 SIX6, SIX6A, SIX6B, SIX6.L coding downstream 61163 8489098 ~ 8492326 (-)
CI01000012_08445692_08459897 MNAT1 coding downstream 93592 8445658 ~ 8459897 (-)
CI01000012_08423495_08432094 SLC38A6 coding downstream 121395 8422804 ~ 8432094 (-)
CI01000012_08604949_08626648 TDRD9 coding upstream 32016 8604835 ~ 8626648 (-)
CI01000012_08632596_08634518 METTL18 coding upstream 59501 8632320 ~ 8634518 (-)
CI01000012_08686460_08701212 NA coding upstream 113641 8686460 ~ 8701212 (-)
CI01000012_08712109_08714569 GDF10A coding upstream 138894 8711713 ~ 8715987 (-)
CI01000012_08745512_08773403 PTPN20 coding upstream 172408 8745227 ~ 8773403 (-)
G74750 NA non-coding downstream 600 8552439 ~ 8552889 (-)
G74748 NA non-coding downstream 3121 8550096 ~ 8550368 (-)
G74735 NA non-coding downstream 79162 8474051 ~ 8474327 (-)
G74733 NA non-coding downstream 134803 8418222 ~ 8418686 (-)
G74703 NA non-coding downstream 184080 8369098 ~ 8369409 (-)
G74767 NA non-coding upstream 38866 8611685 ~ 8612028 (-)
G74728 NA non-coding upstream 83907 8656726 ~ 8657411 (-)
G74778 NA non-coding upstream 98525 8671344 ~ 8671588 (-)
G74837 NA non-coding upstream 167643 8740462 ~ 8740687 (-)
G74841 NA non-coding upstream 177411 8750230 ~ 8750446 (-)
G74701 NA other downstream 185846 8367019 ~ 8367643 (-)
G74648 NA other downstream 287835 8264329 ~ 8265654 (-)
CI01000012_07356934_07358497 NA other downstream 1194944 7356863 ~ 7358612 (-)
G72629 NA other downstream 2405995 6147011 ~ 6147494 (-)
G72294 NA other downstream 3087632 5462840 ~ 5465857 (-)
CI01000012_09068458_09070536 NA other upstream 495087 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA other upstream 498552 9071371 ~ 9073457 (-)
CI01000012_09082056_09083285 NA other upstream 509917 9081877 ~ 9083489 (-)
CI01000012_09400481_09401810 EIF4EBP2 other upstream 825257 9398076 ~ 9402378 (-)
G74982 NA other upstream 1002829 9575648 ~ 9576149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006092 lrrc9 coding NC_007124.7 CM002897.2 31479814 ~ 31494287 (+)