XLOC_006092 (lrrc9)


Basic Information

Item Value
gene id XLOC_006092
gene name lrrc9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31479814 ~ 31494287 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012018
CAAAGACAGTTTGATGAACTCAGAGCCAAGCTCAGGCAGCAGAGAAGAGAGCAGATACAGTTACCGGAGGAGAAGATACGAGTGCTAACACACACGCTTAGACATCTGGAGTGTGAGCTTTCCCATGTAAATTGTGCTGGTACGAAGTCAGAAGAGCCTGAAGACTCTGACCTTTGTCATACTCATGGCTATGagaaaagtctacagaacaaactgaaCGCTCTTAAAATCCGACTCAAGTACTGGAAACAGCATTTAGATGAGGTAGAGTCATGTCACCAGCATAATGTGACTTTGGCTTCAAATAGAAAGGAGATGATGGTGCATTTCCTGCTATTGGAGCTGGAAACAGTGGGGAACATTCGCTTTGAGGAGGGAAACACAGGCGACCTTtgGTTCACATCCTGTTATGATCTCTTACTGTCTCGTTTCTGCGCATGGGATTATAAACTGTACCACATCTCAGGCTTAAAGATCAATCGGATCATCCGGATCCATAATCGAGCCCTGAGGCAACGCTTCCAGGACAAAGTGCACACTCTTCTCTGCAGACAAGAGTCTTCACCCTTCGCACAgaACTATAAACGCAATATGGAGTATCTGTTCTATGTGCCTGATCCAGAACATTCCTGTGAAAATGATGAGATGCTACAAATCCCagaaaatggttttaaaagtGCTGATGCTTATAAGGCATTAGGCAGAGAGAGAGCCGTCCCTTTTTCTAACAGCATGAGTGTGTCTGATCGACTGAGAATGACTTTCATGCAAAGGATGAGCTGCTCAACATCAAACCGAGAGCTTCTACCCTTCAGATACGgTCAGTTAATAATATCTAAAGTGTTCCTGGGTCGTAGTGTTGCAGTAAAGGATGGTCTTCCCATAGACTGCGATCATTATCCCAAGGCAAACTCAGTCTACCTCAGTACCAGCTCTAAACAACAAAGTCACACAGCTCAAACAACCCCTGacatgctgtgttCCTCCAGCCTGCCGAACAGCTGTGACTGTAAACAGCAGCAGAGACTGTGGTATATGTTTGACCACGAAATGGTACTTCCAGAATACCTTGTGGACTTTGAATATGTAACCCAGGACACAGTCCAGGCTTCTCCAGATTCCCCATCCAGTTATCATATGTCTCCTGCTGATGCCCCATCTGTGTCCTATACTGCGCTGGAACTGGATGAGGAGGCATTAAACATGGAGCCCATCCTGAAGTCCCACCCCAAGATGCTCAGCCTAGATGAGAAAGCCATACTGACAGCGGCCAGAGCGAACATTCTCAGTCAGATCACAGTGCTGAATCTACATGGAAACAGCCTAAATAAACTGCCTGAGATTTCCCGACTCACAGCTCTGAAGAATCTGACCCTTAGCTTCAACGAGTTAACTCATCTGGATGATATTTCACACATGCCCAATCTGGAGTCTCTGGATGTTAGTTTTAACCACATTTCCTCTCTGGAGGGTCTGCGTGGGCTCGGTCGTCTGATAGAACTAGACCTTTGCTGGAATCAGTTGACCCGAGTCAGGGATGACATGAATATTTTGCGTAAACACACACCAGCCCTGCTTCGACTGGACACACGGCACAATCCTTGGCAAAGGAATGAGAGTGTGCGTATGGTGGTTCTTAGTCGGCTAAAGACTCTCACTCATTTAGATGATGTTTTAGTAATGGAGGAGGAAGCAGCTGCTGCGGTTCAAGTAGCCACTCGGTCTCGAATCAATCAGgcatCTCTGATGAGCCACTCTCGGACTGACAGCGAACGTCCCCGCAGTCTGAGTCTGCTCTCCTCCGCTCACCTGCTCACACAGATCAGCTCATCCCCATGGAAACACTCGCAGGAGCTTGAGTCAGGCTGGACCAGCAAA

Function

symbol description
lrrc9 Orthologous to human LRRC9 (leucine rich repeat containing 9).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-080917-56 Orthologous to human LRRC9 (leucine rich repeat containing 9).

Ensembl:

ensembl_id ENSDARG00000054352

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012018 True 1878 mRNA 0.47 13 31479814 31494287

Neighbor

gene id symbol gene type direction distance location
XLOC_006091 lrrc9 coding upstream 13 31473190 ~ 31479801 (+)
XLOC_006090 tdrd9 coding upstream 56468 31402067 ~ 31423346 (+)
XLOC_006089 METTL18 coding upstream 86945 31390313 ~ 31392869 (+)
XLOC_006088 antxr1d coding upstream 144064 31297016 ~ 31335750 (+)
XLOC_006087 gdf10a coding upstream 190189 31285660 ~ 31289625 (+)
XLOC_006093 lrrc9 coding downstream 2949 31497236 ~ 31514150 (+)
XLOC_006094 pcnx4 coding downstream 26250 31520537 ~ 31535508 (+)
XLOC_006095 ppm1aa coding downstream 51243 31545530 ~ 31580190 (+)
XLOC_006096 six6a coding downstream 88747 31583034 ~ 31606247 (+)
XLOC_006097 mnat1 coding downstream 153984 31648271 ~ 31681951 (+)
XLOC_006074 NA non-coding upstream 551153 30920554 ~ 30928661 (+)
XLOC_006071 CR762493.1 non-coding upstream 643038 30836656 ~ 30836776 (+)
XLOC_006067 NA non-coding upstream 802171 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 968091 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 1227957 30251741 ~ 30251857 (+)
XLOC_006101 NA non-coding downstream 312233 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 460933 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 610978 32105265 ~ 32108472 (+)
XLOC_006105 CR769766.1 non-coding downstream 898096 32392383 ~ 32392499 (+)
XLOC_006111 CR936241.1 non-coding downstream 1352206 32846493 ~ 32846609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_08553489_08572819 LRRC9 coding CI01000012 null 8553489 ~ 8572819 (-)