XLOC_006094 (pcnx4)


Basic Information

Item Value
gene id XLOC_006094
gene name pcnx4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31520537 ~ 31535508 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012020
GCATTATTCAACTGCAACATAAGCAGGAGCGACGATGGATAACGGGTCCTCTTTATCCCCACACAAACCCTCTACTCGCCCGACAGCACCTTTCCAGACCTTCTAATTTAGAGTGACGCAGCGTCAGCGTGGCATGTGTATGTGTTGTGGAGCCTCTGGGAGGAGATGACTGAGTCTGTTCCTCCTGCGCTGCTGCGTTCATCATCATGGGGCCTGATGTGCCCCTGCTCAATGACTACAAACAGGAGTTCTTTTGGAAGCGCTTTCCTCAGACTGTCCTGGGGGGACCTAGGCTGAAACTCGGCTACTGTGCCCCGCCATATGTCTATGTGCACCAGCTGGTGTTATTCCTGACACCATGGCTATTGGGAGGCATCGGGACCCTCCTTTACCAGCTGAGGGTGCTGGACGAAGCATTTGCGGGCATTGTTTCCGGTGCGCTCATGCTGGGAGTTGGTGCCATCGTTCAGGGAATGGCACGGTGCATGGCACGTAGGACCGGAGTTGTACAAAGACTGCCTGCTGCCAATAACATCCTGGCAGACGAGGAAGAGGTGGAGTTTACTCACTGTGTGGCCCCTGAGACAGTACGATTCGTGGTACCTGGGAAGAGatttatgggtaatgtagttttgcACACGTGTCTCGCTGGAGCTCTCTGTGGGTTGTCAACATGGTACCTGCTGCCGCACAGACTGAGCGGTTTGTATGGGCACACGGGTGCAGGATTGGGTGCCGTTGTGTCTTTGTTTGCTCTGAGCTGGGTGACGGTCTGTATTGGGGAGTATTCTCTCATCGTGAACACGGCTACCGAAACGGCCACATTTCAGCCACAGGACACTTATGAGATCACGCCGCTCAACAGGCCCATGTACATACTTGCCTTCATCGCCGTGGATCTGGCTCTAAGGTTTTCAGATTCTGGTGTGGTGGAACTGCAGGTTGCATCTCAGGTTCTTCATGTGCTGTTTGTAGTTCTGCCAGTACTCTGGGCTTTGGGAATGCTCTCTCCGCTGGACGCTCTTCTACTGTGGGCCATGGAGCAGATCTTGGTGTATGGTCTGGGTGGATCGGCCATGTCCACCAacatcagGCTCTTAGTGATGTTTTTGTCATCAGTGTGTGTTGCAATCTGCACCTACTTCATTCCCACTTCACTCGGTGTGGTTCTGTTCACCGTGGCCATGGGTTTCCTCTTCAGCCAGGACCTGACCCAGCTGCTGGTGCTGGTAAAAGGGGTCTCTCCGACCCTGGGACTGGGCTGGTGGGGGCTTCCTCTTTCCCTGCTCTTCATAATAGGAGCCTTGACCGAGGCTGGACTTCTTCATCAGCTGAACCTTGTCAACTCAGGGAATCTAACATTGAATACGAACTCTGTAGAGAACTGGGAGTCTTCCGGTGTGGTTCCTCCAAACCCACAGGAGGTGCTTGGCTGGCTTCTAATTGCTCTGTTTTTCATCACTCGTCTGCTGAGAGAGCTTCAGGGGGCTTGCATTATTGGAGGAGCCATGCTCAACCCACTCTACCCCAAACGGGTCACAACTGCACAGGCTTTCAGGAGGAAAACCCGTGGCCTGCGTGTTGCAGGAATCATTCGGAGGATCCTATTGAACCTTGTAAGTCCGTTGACGATGATTGCGTTCTTGTCCGTGGATGAATCTTTAGGGAAGATACACACAGCCTCTCTTGCCATTGGCTTCACTCGGGCATTCAGGATGGTGTGGCAGAGCTCTGAGGCGGCTCTACTGCAGATGGTGTTGGTGGTGATCATCAAACTTGCAGGGGGACACAGAGTTGCACACTGGCATGACTTGGGCACTACAGTACAGTTAATACTGGTCTCTCTGGTTGTGAATCGTGTCTCACAGTTTGTATGTAAGCTGAGTTTTGCTCTTACGGTGTTGATCACATCCTGGACTGAGAGTAAACAGCGTCGACAGTCAGCAGGAACTCTGCTGGCACTCAATGCTGCTTTGTGCCCACTTCTACTGGCCGTCGTGGCTCTATCTGCTCTTCTCTCTGCCCCTCTCCTTCCACTATTCACACTACCGGTGTTCCTGGTGGGATTTCCCAGGCCGCTGCGCTCATGGCCAGGCACTCCTGGCACCGCCTGCCCTTGCCCAGATTCTGTGTATTACCAGCAGCTCTGCAAAAGGCTGGCATCAGCTATAAGACCTGCACTTGCTAATGGTGCATTTGGATCCTGCACTCCAGGGTCTCATTACCTAGGCCGCTTTCAGGGTCGTCTTCTGTGGATCTCGATTCTAGAAAAGGGCTATGGCTATTGCACAGTCAACATTAAGGGTCTGGAACTACAGGAGACATCATGCCACACAGTGGAAGCTCGGCGTGTGGACGAGGTTTTCGAAGGAGCGTTTGATCACGTGGAGCGGCCAGGCCAGTGTTTCAGACTATTGAACCCTAACTGGGGTAACGCTCTTATCCCCTGCTCTCTGTTGCCCGTCAGGGTTTACTCTGATGCCCAGAGCGTTCTAACGGGAATTATTGACTCACCCGATCACctgcgtcagctaaactctgACTTCCTCAAAACACTTGTCTGGATTCTATTGCGTTACTGTGTACAGGAATTCACATGCGGTGCTCAGCGAACTAAAGGTCAGACTTTACAGACCTCTGGACGTAAGTCACAAAGCTCCCAGCATCCTGTGCCCTCAGAGGCAGGTCCAGCTGTGATCAAAGTGGAGACTCAAGTACGCCCTGAATCCTCCTCGTCCTCTCACTTGAGGGGTCTGGACAGCTCCAGCCTGTCGTCCTTTGCTGATTGGTCAGACGAGGATGATCTGTTTGGTCCAGTCCCTGTGCGACGACCGATGAGAATGATGGTGCGGACAGATGAAGCGCAGACAGAGTTAGGGCTGGGTGTGTCTCTTCCAGGTTCTGTCGAAATCCACAGCTTGTATGAGAGCATGGCTCTGTCTTCTCTACCGACCCTTAGACCTCTGGGTCTGGGTTTGGGACTTGGCCTGCCCATTATAGataaagggaaagaaaacatccctGCACCTACTTCGACAACTGTCCGGACCAACTCCCAGCCTCTTCTCTTTACCAGCCCTCACTCAGAGCTCTTCTCTCTGCCCGCAGACTGGCGAACCGCCAACTTGGCTTCCTCTAAACTCCAGGTTTTGCGACCCTGCTTCCCAGAGGCCTGGTTCTGCTTCTGTTTATCCCAGCTGGTGCTAGAGAGTTTGGGAGAAGGAGACTTTGAGCAGGTGACGCAGGGTTTACAGGAGGACCGTGCCTTGCAAGAGCTTTATACCCAGGTGGTGCTATCATGCTGTGTGGCGCTAGGGGCAGATGCTCAGGTCTTCAGCCCAAATCTGCTGTTCAGGCTGTACTGTGGGGACGGCCCCTGGACTGAGGGGCTTGAGTGGCTCCGAGCCAATAAAGAGCTGCATCAGCTCACACTCAGAGCTTTCAGgtacAGCGTAAAACTATTGGTAGACCAGGCATCTCTTGGTCCAGTAGAGAGTCTGGATGAGCTCTACACTACTTTGCAGGATTACCATAAAAACTGGTTCATCGGCCTGGTATCAGATCGCAGTTGGCAAGATAGTGTTGTACAGGAGAAGCCCTTCCTGTTCTCTCTTGGACATGACCTCACCATGgggaCGTACACCAGCCGTGTGTTGTCCCTGCAGGAGAATCTGGTCCAAGTGGGAGCTCTAAATGAGGAGGGGGTGAGGGGCCAGTGGGCCAACCTGTCATGGGAACTATTGTATGCCACTAATGACGATGAGGAGCGCTACAGCATTCAGGCCCATCCAGTGATGCTGAGGAACCTCACTATTCAAGCAGCAGATCCGCCTCTGGGATATCCCATATACTCATCCCCTCCAATTCACCTCCGCTGCTTGTGATGCTACCAGCTAACCCATTTCACACAGTCACATGGTTGTGCATTCAATTAGCTCTTTGTGTTTAGGGtacagaaatacatttttaaaggaaaaagCATTTACAAAGGCTACAATGGTAGCAACATCTGGCTTCTGAAAGAAATGCATGAATATCTGAACATCAGCAGATCCCAGATTTATTGGACCTCTAGATGAATCTTGACTGACTTTGAATTCACACTGAGCTTCCtttccacatttttatttaaaattttatttcctCGTCGTGTCAGGCAGGAAATATGTTGCCAATTTAAAGAGCCTGTTTGTCAAATCTCAAGGACGTGCCTTGTTTACTACTTTTAGTGGTTATGAACAGTTTTAGGTGACCACCTTGTGTTATAAATATCAACTGGCTCTTCCTCCTTTGTTCATCCTATTTGGACTCTTGTCATTGTATGGTTGTGTAATTGTTTGTACAGAAGAAATACAGACGTTTCGtataaaaacagtacattttAATACTGA
>TCONS_00012021
TCCGAAGTATCGTCAATCTATAGCAATCGATTATTGATTGGCTTCAGTACTAGAAGGCAGGATTTTTTTACCAAAtggcgatcgatgattggctcctgtactagtagacggggctttattcaccatgtTGACCGTTACACTTATCCACATTCAAAAATAAACGAgtaacatgtcttgtgtattctgtaaTCTTCGGTAATATTCATACAACACTTTTATGCTTTATTATTAACTGATTAAAGTTTTTGTAACTGGTTGCAGGATCCTGCACTCCAGGGTCTCATTACCTAGGCCGCTTTCAGGGTCGTCTTCTGTGGATCTCGATTCTAGAAAAGGGCTATGGCTATTGCACAGTCAACATTAAGGGTCTGGAACTACAGGAGACATCATGCCACACAGTGGAAGCTCGGCGTGTGGACGAGGTTTTCGAAGGAGCGTTTGATCACGTGGAGCGGCCAGGCCAGTGTTTCAGACTATTGAACCCTAACTGGGGTAACGCTCTTATCCCCTGCTCTCTGTTGCCCGTCAGGGTTTACTCTGATGCCCAGAGCGTTCTAACGGGAATTATTGACTCACCCGATCACctgcgtcagctaaactctgACTTCCTCAAAACACTTGTCTGGATTCTATTGCGTTACTGTGTACAGGAATTCACATGCGGTGCTCAGCGAACTAAAGGTCAGACTTTACAGACCTCTGGACGTAAGTCACAAAGCTCCCAGCATCCTGTGCCCTCAGAGGCAGGTCCAGCTGTGATCAAAGTGGAGACTCAAGTACGCCCTGAATCCTCCTCGTCCTCTCACTTGAGGGGTCTGGACAGCTCCAGCCTGTCGTCCTTTGCTGATTGGTCAGACGAGGATGATCTGTTTGGTCCAGTCCCTGTGCGACGACCGATGAGAATGATGGTGCGGACAGATGAAGCGC

Function

symbol description
pcnx4 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human PCNX4 (pecanex 4).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-185 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human PCNX4 (pecanex 4).

Ensembl:

ensembl_id ENSDARG00000060785

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012020 False 4391 mRNA 0.51 11 31520537 31535508
TCONS_00012021 True 927 lncRNA 0.48 2 31531431 31532435

Neighbor

gene id symbol gene type direction distance location
XLOC_006093 lrrc9 coding upstream 6387 31497236 ~ 31514150 (+)
XLOC_006092 lrrc9 coding upstream 26250 31479814 ~ 31494287 (+)
XLOC_006091 lrrc9 coding upstream 40736 31473190 ~ 31479801 (+)
XLOC_006090 tdrd9 coding upstream 97191 31402067 ~ 31423346 (+)
XLOC_006089 METTL18 coding upstream 127668 31390313 ~ 31392869 (+)
XLOC_006095 ppm1aa coding downstream 10022 31545530 ~ 31580190 (+)
XLOC_006096 six6a coding downstream 47526 31583034 ~ 31606247 (+)
XLOC_006097 mnat1 coding downstream 112763 31648271 ~ 31681951 (+)
XLOC_006098 slc38a6 coding downstream 152465 31687973 ~ 31707870 (+)
XLOC_006099 prkcha coding downstream 181312 31716820 ~ 31748970 (+)
XLOC_006074 NA non-coding upstream 591876 30920554 ~ 30928661 (+)
XLOC_006071 CR762493.1 non-coding upstream 683761 30836656 ~ 30836776 (+)
XLOC_006067 NA non-coding upstream 842894 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 1008814 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 1268680 30251741 ~ 30251857 (+)
XLOC_006101 NA non-coding downstream 271012 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 419712 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 569757 32105265 ~ 32108472 (+)
XLOC_006105 CR769766.1 non-coding downstream 856875 32392383 ~ 32392499 (+)
XLOC_006111 CR936241.1 non-coding downstream 1310985 32846493 ~ 32846609 (+)

Expression


Co-expression Network