XLOC_006097 (mnat1)


Basic Information

Item Value
gene id XLOC_006097
gene name mnat1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31648271 ~ 31681951 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012029
ATGTATTGCGCATGTTTGTTTCCACCAGGAGGGTTTTATATGTAACACGCGACTGGATGCCGAAGACAGCGCTGCAGAGTGCATTGATCACTATTTATTCTCTTCCCGAAGGAttctaaaataacaataaaatggaTGATCAGGGATGCCCGAGGTGCAAGACGACAAAATACAGAAACCCGTCTCTGAAGCTGATGGTGAATGTGTGCGGACACACGCTgtgtgaGAGCTGTGTGGACATGCTGTTTGTCCGTGGTTCTGGTAACTGTGTGCAGTGTGACACTCCTCTCAGAAAGAGTAATTTCCGTGTGCAGCTCTTCGAAGATCCAGCCATCGATAAAGAGGTGGAGATTCGCAAGAAGGTCCTCAAAATTTATAATAAGAGAGAATTCGATTTTTCCTCTCTGACTGAGTATAATGACTATCTGGAGCAGGTGGAAGACATCGTGTTTAACCTGGCCAATAACATGGATGTAGAAATGACCAAGCAGAAGATGGAACAGTATCAGCGAGATAACAAAGATGTTATAcagagaaacaaagcaaaacTGACGCGCGAGCAAGAGGAGTTGGAGGAGCTGTTGTTGCAGGAGCAGCAGGATTCAGAGCTGAGGAGACTGGAGACCCTACAGGAGGAACAGAGGCAACTGCAGGCtaagaggaaaaacaaacaggcCCTGCTGGATGAACtgGAGAATTCCAAGTTACCTGCGGCAGTGCTATTGGCCCAACATAAAGACAGAGCAGCCCATCTAGAGACCCAGAtagaaaaacagaaacaaaacgtCAAACCCACAAACATCTTCTCGACTGGAATAATGATGggTCAGACCGTATCTTTGGCTTCTGTGTCCCGCGTGGAGGAAGTTTTATATGTTTATCAGCCTCTGTACATTGACACATATGGGCCGCCTGTTCCAGAATTGGATCAGCTAGGCCGAAAAGGGTTTCTGAATCACGTTCGCGCCGCGTCTCTGCAGGATCAGGCTGGCGGTTATACATCAGGACTGGCCTGTCATCGGGCCATCCAGGACGCTTTCAGTGGCCTCTTCTCCTTGTAAAATTGGAAAAGGATGGAAAGTTCTGACTTTCAAAAGACTTACAATGGGAGAAGTTGGAAGTTTGAGAAAGAAACATCCCAGTTTTTCTGTTAAGAGGGTGTGAGCTATAATAGGTGTACAGATATTTTTGTtgataagttgttttttttatgcgGTGTTGGTAAATAAACACAAGAAGATTT

Function

symbol description
mnat1 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity and metal ion binding activity. Predicted to be involved in DNA repair; regulation of cyclin-dependent protein serine/threonine kinase activity; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair and positive regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH holo complex. Orthologous to human MNAT1 (MNAT1 component of CDK activating kinase).

GO:

id name namespace
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0007049 cell cycle biological_process
GO:0006281 DNA repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005675 transcription factor TFIIH holo complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03420 Nucleotide excision repair
ko03021 Transcription machinery
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-041010-203 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity and metal ion binding activity. Predicted to be involved in DNA repair; regulation of cyclin-dependent protein serine/threonine kinase activity; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair and positive regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH holo complex. Orthologous to human MNAT1 (MNAT1 component of CDK activating kinase).

Ensembl:

ensembl_id ENSDARG00000002077

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012029 True 1243 mRNA 0.45 8 31648271 31681951

Neighbor

gene id symbol gene type direction distance location
XLOC_006096 six6a coding upstream 42024 31583034 ~ 31606247 (+)
XLOC_006095 ppm1aa coding upstream 68081 31545530 ~ 31580190 (+)
XLOC_006094 pcnx4 coding upstream 112763 31520537 ~ 31535508 (+)
XLOC_006093 lrrc9 coding upstream 134121 31497236 ~ 31514150 (+)
XLOC_006092 lrrc9 coding upstream 153984 31479814 ~ 31494287 (+)
XLOC_006098 slc38a6 coding downstream 6022 31687973 ~ 31707870 (+)
XLOC_006099 prkcha coding downstream 34869 31716820 ~ 31748970 (+)
XLOC_006100 hif1aa coding downstream 75380 31757331 ~ 31783663 (+)
XLOC_006101 NA coding downstream 124569 31806520 ~ 31850508 (+)
XLOC_006102 NA coding downstream 273269 31955220 ~ 31978484 (+)
XLOC_006074 NA non-coding upstream 719610 30920554 ~ 30928661 (+)
XLOC_006071 CR762493.1 non-coding upstream 811495 30836656 ~ 30836776 (+)
XLOC_006067 NA non-coding upstream 970628 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 1136548 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 1396414 30251741 ~ 30251857 (+)
XLOC_006103 NA non-coding downstream 423314 32105265 ~ 32108472 (+)
XLOC_006105 CR769766.1 non-coding downstream 710432 32392383 ~ 32392499 (+)
XLOC_006111 CR936241.1 non-coding downstream 1164542 32846493 ~ 32846609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_08445692_08459897 MNAT1 coding CI01000012 null 8445658 ~ 8459897 (-)