Fish Transcriptome and Expression Database

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model fish

XLOC_006063 (AL929330.1)

Basic Information

Item	Value
gene id	XLOC_006063
gene name	AL929330.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	30251741 ~ 30251857 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011975
TTATACGGCCTTATCAACCTGCACCTCAAGatcagttactcactgaagctaagcaggactgagcctggtcagtacctggattggagaccaattgtgaaaactaggttgctgtcggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000115414

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00011975	True	117	rRNA	0.47	1	30251741	30251857

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006062	qrfpra	coding	upstream	16521	30215765 ~ 30235220 (+)
XLOC_006061	pald1b	coding	upstream	37373	30169233 ~ 30214368 (+)
XLOC_006060	eif4ebp2	coding	upstream	82844	30163515 ~ 30168897 (+)
XLOC_006059	spock2	coding	upstream	119485	30054996 ~ 30132256 (+)
XLOC_006058	dnajb12a	coding	upstream	204988	30035253 ~ 30046753 (+)
XLOC_006064	zmiz1a	coding	downstream	169615	30421472 ~ 30570859 (+)
XLOC_006065	AL844152.1	coding	downstream	259750	30511607 ~ 30511723 (+)
XLOC_006066	ppifa	coding	downstream	320315	30572172 ~ 30575799 (+)
XLOC_006067	NA	coding	downstream	424968	30676825 ~ 30677643 (+)
XLOC_006068	CR762483.1	coding	downstream	440812	30692669 ~ 30695994 (+)
XLOC_006056	NA	non-coding	upstream	359921	29889189 ~ 29891820 (+)
XLOC_006054	CT025909.2	non-coding	upstream	496314	29755293 ~ 29755427 (+)
XLOC_006053	CT025909.1	non-coding	upstream	660626	29590994 ~ 29591115 (+)
XLOC_006049	NA	non-coding	upstream	802020	29446817 ~ 29449721 (+)
XLOC_006044	NA	non-coding	upstream	1168450	29083087 ~ 29083291 (+)
XLOC_006071	CR762493.1	non-coding	downstream	584799	30836656 ~ 30836776 (+)
XLOC_006074	NA	non-coding	downstream	668697	30920554 ~ 30928661 (+)
XLOC_006101	NA	non-coding	downstream	1554663	31806520 ~ 31850508 (+)

Expression

Co-expression Network