XLOC_006099 (prkcha)


Basic Information

Item Value
gene id XLOC_006099
gene name prkcha
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31716820 ~ 31748970 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012031
GTTCTTCCGCAAAGCAGGTGTTTTCAGCAGCGCGTTTCAGATGCAGACGCTTCTAACTGCCGTGCGTTTGCCCATTTACGGTTCCCCATGTCCCCGTGTGAGTAATACAGCGTCCAGCGTTTAAGTCTTTCAGACGTGTATTTTGCTCAGAAGGCATCATGAAGTTTAACGGATATCTGAAGTTGCGTATCGGTGAAGCGGTGGACCTGAAGCCCACGACCACCTCCATGCGCCACGCCGTGATGTTCAACAAGGCGACCCAAACACTAGACCCCTACATAGTCGTGAAAGTGGACGAGTATAAGATCGGACAGACGCACACCAAGCTGAAAACCAACATGCCCACTTATAACGAGGAGTTCTCCGTTAACGTAAACAACGGTAAGCAAGTGGAGCTCGCCGTTTTTCATGACGCACCGATCGGTTACGATGACTTTGTGGCCAACTGTACTATCCAGTTTGACGATCTGATGAAGACCAACAGCAGAGAGGAGTCTTTTGAAGGATGGGTTGATCTTGAACCTGAGGGTAAGGTTTACATCCTGGTTACTCTCACAGGCTCATTTATTGATGAGGATGCTGGAGGAAACGCGCGCCCCTACAAAGAGTTTAATCGAAAACGGCAACAGGCAGTCAGAAGAAAAATTCACCAAGTCAACGGGCACAAATTCATGTCAACTTTCTTAAAGCAACcaacattctgtttccactgcaaaGAGTTCATATGggGTGTTTTTGGAAAACAGGGCTACCAATGTCAAGTTTGCACCTGTGTTGTGCACAAGCGATGCCATCAGCTTGTGGTCACGGTTTGTCCACGCATGAAAAAACCTGCCAAGGAGCAGagtACAACTCAGGGTTTCAGTATAAACGTTCCCCACAAGTTCAGCATCCACAATTATAAAGTTCCCACCTTCTGTGACCACTGCGGCTCTTTGCTGTGGGGCATCGTACGTCAAGGATTGCACTGCAAAATTTGTAAAATGAATGTCCATATACGCTGTAAAGGAAATGTCGCACCAAACTGTGGAATCAACAATGTTGAACTGGCAAATAAACTGGCAGAAATGGGCCTTCAGCCTGGAGGACTGACCAAACGCAACTCAGTGGGTCTTGCAGGTTTGGACGCTCAGTCCCGGACACTGAGTGTTAGAGGAGAACGAGGGCAGTCTAAAAAAGAGCAGTGTCTGAAACTGGGAATCTCCAACTTCACATTGTTGCAGGTGTTGGGAAAAGGCAGCTTTGGCAAGGTGATGTTGGTCCGGCTGAACGGGTCAGATCAGGTGTTTGCAGTAAAAATCCTGAAGAAAGACATCATACTGCAGGATGATGATGTGGAGTGCACTATGACAGAAAAACGAGTGTTATCTCTCGCTTCCACTCATCCTTACCTCACCCAGCTCTACTGCTGCTTCCAGACAccgGAGCGTTTGTTTTTCGTAATGGAGTTTGTGAATGGAGGAGATCTGATGTTTCATATTCAGAAATCCAGAAAGTTTGAGGAGAACCGAGCCAGATTTTACACAGCGGAGATCACATCTGCGCTCATATTCCTCCACAGCAAGGGGATTGTATACAGGGATCTAAAGCTGGATAATGTTTTGCTGGATAAGGATGGTCATTGTAAACTGGCTGATTTCGGCATGTGTAAGGAAGGGATGTTTGACGGTATTGTGACTGGAACCTTCTGTGGAACCCCAGATTACATTGCACCAGAGATTCTCCAGGAATTACTGTACGGGCCGTCGGTTGATTGGTGGGCTCTCGGTGTGCTGCTCTATGAGATGCTCTCAGGCCACGCCCCCTTCGAGGCAGAGAACGAGGATGACCTTTTTGAGTCCATCCTGACGGAAGAGATCATCTACGCATCCTGGCTCAGCACAAACGCTGTCGACATACTGAAAGGGTTTCTGACAAAGAATCCATCCCGACGCCTGGGTTGTGTAGCTACAGAGGGTGGAGAGACTGCTGTAACCGGTCATCCATTCTTTACCGACATCGACTGGGACAAACTTGACCAACGAGCGCTTGAACCACCTTTCAAGCCCAGAATTAAAACTGCAGAAGATGTGAATAACTTTGATCCAGACTTCACCCAAGAGGATCCTACACTTACACCCATCGATGAGTCCATCCTCCCATCCATCAGTCAGGATGACTTCAGGGGCTTCTCCTTTACCTCTTCTGAACTCTTAAAAATGGTTTCCGATTTCCAAAGAGCTGAAGAAACAAGTGATGTCAAGAAAGAATGGACCTCAGGAGAATTCTGTGATTTCGTTGGACCAAATGGATTGTGACAGCGTGCACTTGTGTGAGCAGTCTTTGCATCTAAGCCAGTTCAAAACTGCATTTCAGTGGTCTAGCTTTCTTTTGCCCTACACTTGTGTTTTAACACAGCAGGGGATTCTCTTTGTGTCAAATGTGTCGCAAGACACCCAATCCTGGGGGAGACCAGTTTACATTGAAACTGATCTATGGATGAACTGGTCAGCTTAGTGTCTAAATTATCTAACAGTGTTTAGGAAACTTGATTTGAACGCTCTTCACTTTCTGTGCCTAGCACAGACAAACATCATGCAGAAGCATTGCTAATTTTGTCAGAATAGTTCTGTTGTCATAGAACACAACTCAAAAGTTGGAATGCACCTGTGTTTTTAATAGGAACTCTAGTTTTGTAAAGACATTTTCCTGTACATTTGTCTGACTTTTTGTCTGTTAGTGTGGTATTACATTTTAGGTCAGGATTTCACCCATTATTCAATTCCAGCATGTCTGGATGTGTTTTATTGTTGATAAAGGTTGCAGTATTGAGTTTTTCACGTTTAGACCTTTTCTGTCTGTGACTCCATCAGAAGCCGCTTCCCCTCTGTCATTTGCAGGGGTTAAAGGGCAACACACTCAGGTGAGACGGTGACCAGTTTCAATTCTTTATATTGAGGCCAGCGACTCTTTTTCCTcatcttcattattatttaatgttgtttatgtGGCTCTTCCAAGTCTGAGCAGAGCGAGATCTCTCTTGGCTGATGCTTTCATGTCAGTGCATATTTGGCACACAGTTCCCATCTATTACTGTTTGTGCAGTAGATTCACTATTCTGAAGTAAGCTCATCAAATAGATTGAACTTAGACAATTACTTATTATGGGCCTTAATGTACTCTCAGTTCTTCGTTTCTGGATGAAAAGTAAAATACCATTTAGATTAATATGAAGATATGTGCTCTGTATTTCCCTCTAAATACTTATATAATTACAGCAGAAAACGGCCATTAACATATGTTAATCCCTCAGCTCTAAGGCACTCAAAGTCaactcatgtttatttatttagcactttAATGGTTTGAAGCAAGCAGCTTTACAGTATTAAACATGATTAACTTTCAATCATAAAA

Function

symbol description
prkcha Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in cerebral infarction. Orthologous to human PRKCH (protein kinase C eta).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004697 protein kinase C activity molecular_function
GO:0004698 calcium-dependent protein kinase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080402-5 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in cerebral infarction. Orthologous to human PRKCH (protein kinase C eta).

Ensembl:

ensembl_id ENSDARG00000018382

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012031 True 3399 mRNA 0.44 14 31716820 31748970

Neighbor

gene id symbol gene type direction distance location
XLOC_006098 slc38a6 coding upstream 8950 31687973 ~ 31707870 (+)
XLOC_006097 mnat1 coding upstream 34869 31648271 ~ 31681951 (+)
XLOC_006096 six6a coding upstream 110573 31583034 ~ 31606247 (+)
XLOC_006095 ppm1aa coding upstream 136630 31545530 ~ 31580190 (+)
XLOC_006094 pcnx4 coding upstream 181312 31520537 ~ 31535508 (+)
XLOC_006100 hif1aa coding downstream 8361 31757331 ~ 31783663 (+)
XLOC_006101 NA coding downstream 57550 31806520 ~ 31850508 (+)
XLOC_006102 NA coding downstream 206250 31955220 ~ 31978484 (+)
XLOC_006103 NA coding downstream 356295 32105265 ~ 32108472 (+)
XLOC_006104 osr1 coding downstream 395400 32144370 ~ 32150443 (+)
XLOC_006074 NA non-coding upstream 788159 30920554 ~ 30928661 (+)
XLOC_006071 CR762493.1 non-coding upstream 880044 30836656 ~ 30836776 (+)
XLOC_006067 NA non-coding upstream 1039177 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 1205097 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 1464963 30251741 ~ 30251857 (+)
XLOC_006105 CR769766.1 non-coding downstream 643413 32392383 ~ 32392499 (+)
XLOC_006111 CR936241.1 non-coding downstream 1097523 32846493 ~ 32846609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_08399430_08416750 PRKCHA coding CI01000012 null 8397766 ~ 8417291 (-)