XLOC_006104 (osr1)


Basic Information

Item Value
gene id XLOC_006104
gene name osr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32144370 ~ 32150443 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012035
AAGACAGAGCTAGAGtaagagagtgaaagagagagagagtttctaCCCCGAGTAACCAAATACTCACAGCGCACAACCGCTGGACCACAGCTGTGCGAACTTCAGGGTTTTCCCGTGTCTCTGCTGCGAGAACATGCTGAGGAAGACGAACATTTCTCCGATCCGCTGAGTTTTGCACTGAATTTTGAAACGCCGCAGGAAGACTAAGTGACTGTATCTGAATCCTCTTATTTTGGATCGTCTCGCTTCACAAAGAACTGAATCTTTCTGGAATTAGTCATGGGTAGTAAGACGCTCCCAGCACCTGTGCCTCTTCACCCTTCTTTGCAGCTGGCGAACTATTCTTTCCTTCAGACCTCCAACGGGCTGCATTTGCCTGCCGACCACATGCCCAGCATCTATAGTTTCAGTGCCTTGCATGCCGTCCATCTGCACCAGTGGACTCTGGGTTACCCCCCATTCACTTTGCCACGCTGCACCTTTTCCAAACTGCCTGGCCTGGTGGATGCCCGCTTCCCTCTTCCCTCAATCCCACTGTTCCCCCATCTTGTCCAACCTGCCAAGCAGGAATCCTCCGGGCCTGGTTCTGGAGCATCCAGCAAAAGTAAACCCCGTTTTGACTTTGCCAACCTGGCAGCGGCCGCAACACAGGACGACGCCCTGAAGGCAGAAGATCTGAGCACCAACAACGGGCACGTGCGCTCACCCTCGTTAGGTTGCCTGCTGGATGTGGCCAAGCTCTCCTCGCCAGAAAGAAAACCCAGCCGTGGACGACTCCCATCCAAGACGAAAAAGGAGTTTGTGTGCAAGTTCTGCGGCCGACACTTCACCAAGTCTTACAACCTGTTGATCCacgagcgcacacacacagacgagCGGCCGTACACTTGTGATATCTGTCATAAGGCCTTTAGGAGGCAGGACCACCTGAGAGACCACAGGTACATCCATTCCAAAGAGAAGCCATTTAAATGCCAAGAGTGCGGAAAGGGTTTCTGTCAGTCCAGAACTCTTGCCGTCCACAAAACATTACACATGCAGGTCAAGGAGCTCAAGCCAGCCAAGATAAAGTAAAGGCATTTGCTTTCATCAGTGGGGACGCTATAAAACCTAGTGACACAAGCCAATAACATTGTCATTCCAAGGCCACAGAGACTCTTTGCAAGCGCCATGGACCTCTGTACGGCTTAACGCACCAAAGATGGATTAGGCCTGACCAAAGAGCTTCCTGAAAAGGCAAACTTCCATAGCCTACAGCCATGATGCCTTAAAGTGTGACTGATACAAAGGAATGGAGAACCCGGATAGGAAGTCATGGAACTCAGCAGAAGCGTGGATTTAAGACAATCAAATTGACTGATTTGTTTGAAAAAGACCAAATAAGCAAAACCAGCGCCGACACCAAAGAGAACAGCTAGAGCGAGATCTGTGATTTTAGTCTGCACTGCTCCATTCCGAATgattatttttgtaaacagtgattttttatAGATATTGTTGTTGATGAAGGCAGATTCTTCCTATGCAGTTACAGGGAGCACACCAGAGCTCTCAGACCAAAGTCAGTCGAGCAGACATTTCTTCTCACCAAAGACACCTTCAATCATGTAATTCCTCCTTTTGTACAGATTCCTTTTTTGTATAACTGATATTTGGCACTTTAATctgattattgtttatttacatgtatCACTGGATTCCTTAAacttatttttgaaaataaatagtcGTTTCTGTA
>TCONS_00012036
CTTTCTGGAATTAGTCATGGGTAGTAAGACGCTCCCAGCACCTGTGCCTCTTCACCCTTCTTTGCAGCTGGCGAACTATTCTTTCCTTCAGACCTCCAACGGGCTGCATTTGCCTGCCGACCACATGCCCAGCATCTATAGTTTCAGTGCCTTGCATGCCGTCCATCTGCACCAGTGGACTCTGGGTTACCCCCCATTCACTTTGCCACGCTGCACCTTTTCCAAACTGCCTGGCCTGGTGGATGCCCGCTTCCCTCTTCCCTCAATCCCACTGTTCCCCCATCTTGTCCAACCTGCCAAGCAGGAATCCTCCGGGCCTGGTTCTGGAGCATCCAGCAAAAGTAAACCCCGTTTTGACTTTGCCAACCTGGCAGCGGCCGCAACACAGGACGACGCCCTGAAGGCAGAAGATCTGAGCACCAACAACGGGCACGTGCGCTCACCCTCGTTAGGTTGCCTGCTGGATGTGGCCAAGCTCTCCTCGCCAGAAAGAAAACCCAGCCGTGGACGACTCCCATCCAAGACGAAAAAGGAGTTTGTGTGCAAGTTCTGCGGCCGACACTTCACCAAGTCTTACAACCTGTTGATCCacgagcgcacacacacagacgagCGGCCGTACACTTGTGATATCTGTCATAAGGCCTTTAGGAGGCAGGACCACCTGAGAGACCACAGGTACATCCATTCCAAAGAGAAGCCATTTAAATGCCAAGAGTGCGGAAAGGGTTTCTGTCAGTCCAGAACTCTTGCCGTCCACAAAACATTACACATGCAGGTCAAGGAGCTCAAGCCAGCCAAGATAAAGTAA

Function

symbol description
osr1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in angioblast cell differentiation; negative regulation of transcription by RNA polymerase II; and pronephric nephron tubule development. Acts upstream of or within several processes, including nephron development; pectoral fin development; and regulation of nodal signaling pathway. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; germ ring; head; mesoderm; and vasculature. Orthologous to human OSR1 (odd-skipped related transcription factor 1).

GO:

id name namespace
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0035776 pronephric proximal tubule development biological_process
GO:0035777 pronephric distal tubule development biological_process
GO:0035778 pronephric nephron tubule epithelial cell differentiation biological_process
GO:0035779 angioblast cell differentiation biological_process
GO:0072112 glomerular visceral epithelial cell differentiation biological_process
GO:0048793 pronephros development biological_process
GO:0007275 multicellular organism development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0001822 kidney development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001655 urogenital system development biological_process
GO:0048382 mesendoderm development biological_process
GO:0048389 intermediate mesoderm development biological_process
GO:0033339 pectoral fin development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070321-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in angioblast cell differentiation; negative regulation of transcription by RNA polymerase II; and pronephric nephron tubule development. Acts upstream of or within several processes, including nephron development; pectoral fin development; and regulation of nodal signaling pathway. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; germ ring; head; mesoderm; and vasculature. Orthologous to human OSR1 (odd-skipped related transcription factor 1).

Ensembl:

ensembl_id ENSDARG00000014091

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012035 False 1738 mRNA 0.48 3 32144370 32150443
TCONS_00012036 True 811 mRNA 0.54 2 32148338 32149779

Neighbor

gene id symbol gene type direction distance location
XLOC_006103 NA coding upstream 35898 32105265 ~ 32108472 (+)
XLOC_006102 NA coding upstream 165886 31955220 ~ 31978484 (+)
XLOC_006101 NA coding upstream 293862 31806520 ~ 31850508 (+)
XLOC_006100 hif1aa coding upstream 360707 31757331 ~ 31783663 (+)
XLOC_006099 prkcha coding upstream 395400 31716820 ~ 31748970 (+)
XLOC_006105 CR769766.1 coding downstream 241940 32392383 ~ 32392499 (+)
XLOC_006106 nt5c1ba coding downstream 295726 32446169 ~ 32453932 (+)
XLOC_006107 rdh14a coding downstream 303819 32454262 ~ 32456842 (+)
XLOC_006108 mtres1 coding downstream 485754 32636197 ~ 32641537 (+)
XLOC_006109 sobpa coding downstream 590066 32740509 ~ 32796029 (+)
XLOC_006074 NA non-coding upstream 1215709 30920554 ~ 30928661 (+)
XLOC_006071 CR762493.1 non-coding upstream 1307594 30836656 ~ 30836776 (+)
XLOC_006111 CR936241.1 non-coding downstream 696050 32846493 ~ 32846609 (+)
XLOC_006112 NA non-coding downstream 756200 32906643 ~ 32916926 (+)
XLOC_006113 BX470227.1 non-coding downstream 834211 32984654 ~ 32984769 (+)
XLOC_006116 NA non-coding downstream 954468 33104911 ~ 33105228 (+)

Expression


Co-expression Network