XLOC_006107 (rdh14a)


Basic Information

Item Value
gene id XLOC_006107
gene name rdh14a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32454262 ~ 32456842 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012039
ATTCTTGCTGCTTCCCACATGCGTGAATGTTTACGCCTACAAACCTACTGATGTCCGGGTCGTTGTCGATGGCTCCAGAAGGATCAGCAGTTAAGCATTTACTCCCCGTTACAAACATAAAGACGAAAGCGTCGACATGTTGCGTGGCAAAACTGTTATCGTGACCGGGGCGAACAGTGGCATTGGAAAAGCCACGACCACGGAGCTGCTGCGGCGTCAGGCCCGGGTGATTATGGCATGTAGAGACCGAGAACGAGCAGAGAAAGCGGCCCAGGAGATCAAGCAGGAGGCCGGACCAGAGCATGGGGAACTGGTGATCAAACTCTTGGACCTGGCGTCGCTAAAATCTGTCCGCGTGTTCTGCGAAGGGATAATAAAGGAAGAGCCGAGAATCGACATCCTGATTAACAATGCAGGAATTTACCAGTGCCCTTACACCAAATCAGAAGACGGCTTCGAGATGCAGTTTGCTGTCAATCATCTGGGTCACTTCCTGCTCACTAACCTCCTGCTGGACCTCCTCAAGTGCTCTGCCCCAAGCCGCATCATCGTGGTTTCCTCCAAGCTCTACAAGTATGGCGAAATAAACTTTGATGACCTAAACAGTGAGCAGAGCTACGACAAAGCTTTCTCTTACGCCCGGAGTAAACTAGCCAATCTTCTGTTCACGCTGGAGCTCTCGCACAAACTTAAAGAGACGGGAGTCACAGTAAACGCTCTCACCCCAGGAATTGTGAGAACTAACCTGGGCAGACATGTCCACATCCCACTGCTGGTGAAGCCTCTGTTTAACTTGGCATCAAGGGCCTTCTTCAAGTCCCCTGAGGAGGGGGCGCAGACGTCTGTCTATCTGGCCTGCTCTGAGGATGTGGAGGGGGTTCAAGGGAAATGCTTTGCTGACTGCAAGGAGGAACAGTTGTTAGCTAAAGCCACAGATGAAGAGGTGGCCAAGAAACTGTGGGACATCAGTGAAGTAATGGTGggcatcacaacctaaatcttacACTTTACAAGACGTATGTCCATGATTATTTCAAAATTGGCAACTCTGAGAAAATAAAAGCTAACAGATTATCCCCATCATGTATTCTGGACAAACTTTTAAAACATACTCATGCTAACATCCACAGGGGGGAGCTGTTTTTGACATGCATGTATTGTGCATTTGAAATGCTAACTCAGTAACAGCAGGCAGATTTGTAGATATGCTGCAACAGTAACAATGCTTTTGTCAATATATATTTAaggaatttatattttaatgaaactgATCTgttatcacattttattttatgtttttttatgacaCGTTGGCTAAGGCTATACTCAATCTAAACAGGGGGACAAGACTGCAGTCAGTAGTGTACAAGGACACTTCACTGACTGAGACTAAGTGCACATAATGAGAATTTTTGATCGCAGTATTGGGTTGTTACAGTCCCTTCTGTTAAGAGTGGAATGTTTATGCATTTAATTGTACTTTACTTACTCAACAACCTACATGCTCAGTTTTAAGATACTCTAAACAAAGGAAATGTACAGTAGCAATACCTGcatttcatgtgtgtgtgtgtgtgtgtaagtgagtgagtgagatataactaataatattaaaagaaaataatatttttaaaggaa

Function

symbol description
rdh14a Orthologous to human RDH14 (retinol dehydrogenase 14).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-124 Orthologous to human RDH14 (retinol dehydrogenase 14).

Ensembl:

ensembl_id ENSDARG00000039299

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012039 True 1638 mRNA 0.44 2 32454262 32456842

Neighbor

gene id symbol gene type direction distance location
XLOC_006106 nt5c1ba coding upstream 330 32446169 ~ 32453932 (+)
XLOC_006105 CR769766.1 coding upstream 61763 32392383 ~ 32392499 (+)
XLOC_006104 osr1 coding upstream 303819 32144370 ~ 32150443 (+)
XLOC_006103 NA coding upstream 345790 32105265 ~ 32108472 (+)
XLOC_006102 NA coding upstream 475778 31955220 ~ 31978484 (+)
XLOC_006108 mtres1 coding downstream 179355 32636197 ~ 32641537 (+)
XLOC_006109 sobpa coding downstream 283667 32740509 ~ 32796029 (+)
XLOC_006110 slc66a3 coding downstream 350577 32807419 ~ 32812903 (+)
XLOC_006111 CR936241.1 coding downstream 389651 32846493 ~ 32846609 (+)
XLOC_006112 NA coding downstream 449801 32906643 ~ 32916926 (+)
XLOC_006101 NA non-coding upstream 603754 31806520 ~ 31850508 (+)
XLOC_006074 NA non-coding upstream 1525601 30920554 ~ 30928661 (+)
XLOC_006113 BX470227.1 non-coding downstream 527812 32984654 ~ 32984769 (+)
XLOC_006116 NA non-coding downstream 648069 33104911 ~ 33105228 (+)
XLOC_006133 CR524481.1 non-coding downstream 1969406 34426248 ~ 34426365 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07925520_07928491 RDH14, RDH14A coding CI01000012 null 7925456 ~ 7928491 (-)
grasscarp (Ctenopharyngodon idella) G95349 NA non-coding CI01000016 null 3370834 ~ 3371077 (+)
rainbow trout (Oncorhynchus mykiss) G98025 NA non-coding NC_048565.1 CM023219.2 87888852 ~ 87889141 (+)
eurasian perch (Perca fluviatilis) G80741 LOC105920527,LOC107095263,LOC103369598,LOC106535878 non-coding NC_053118.1 CM020915.1 42947858 ~ 42951947 (+)