XLOC_006116


Basic Information

Item Value
gene id XLOC_006116
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33104911 ~ 33105228 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013409
AACAGAGTTTTAACTCACGGGTTGTTCTGTGTGCACCATTCCAACACACCAAGCTGACAGGACAGAGTGCAAGCCAAATCGCTCAATGCTGAATCATTGCTCTGGGGCTACAGAGACAATAAGAAAGATAGACTTCAATCACATACACTAACAAGGATTAATATTCTGAAACATTGTAAGCTTTCATACACAGACAAAACATGAACTTTACTTCTGAATGTTGTCTATCATATTTTATACTTAAACCTTAACTAAAACAGATCACAAACATCATGGcaattaaaatgctaatttaaagaGAGGCTCAAAAACAGACCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013409 True 318 lncRNA 0.36 1 33104911 33105228

Neighbor

gene id symbol gene type direction distance location
XLOC_006115 rdh12 coding upstream 39081 33055548 ~ 33065830 (+)
XLOC_006114 arg2 coding upstream 70537 33024547 ~ 33034374 (+)
XLOC_006113 BX470227.1 coding upstream 120142 32984654 ~ 32984769 (+)
XLOC_006112 NA coding upstream 187985 32906643 ~ 32916926 (+)
XLOC_006111 CR936241.1 coding upstream 258302 32846493 ~ 32846609 (+)
XLOC_006117 si:ch211-10a23.2 coding downstream 12300 33117528 ~ 33123240 (+)
XLOC_006118 ndufaf1 coding downstream 140922 33246150 ~ 33251757 (+)
XLOC_006119 oip5 coding downstream 151619 33256847 ~ 33259799 (+)
XLOC_006120 tmem39b coding downstream 163429 33268657 ~ 33281310 (+)
XLOC_006121 ccdc28b coding downstream 176867 33282095 ~ 33293654 (+)
XLOC_006105 CR769766.1 non-coding upstream 712412 32392383 ~ 32392499 (+)
XLOC_006103 NA non-coding upstream 996439 32105265 ~ 32108472 (+)
XLOC_006133 CR524481.1 non-coding downstream 1321020 34426248 ~ 34426365 (+)
XLOC_006135 NA non-coding downstream 1646946 34752174 ~ 34984913 (+)
XLOC_006136 CR376850.1 non-coding downstream 1778018 34883246 ~ 34883370 (+)
XLOC_006137 CR376850.2 non-coding downstream 1864291 34969519 ~ 34969645 (+)
XLOC_006140 CU681845.1 non-coding downstream 2378390 35483618 ~ 35522176 (+)

Expression


Co-expression Network