XLOC_006120 (tmem39b)


Basic Information

Item Value
gene id XLOC_006120
gene name tmem39b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33268657 ~ 33281310 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012058
GCGCGTGCGTGCGCGCGTACGGTACAACATCAACAGAATGAACCCTCCTCGTTTACTGTCagaaattaaacaaaccttttacGATCccaagtaattaattaattctctGTTCAAGTATTGGATGTGTTTCAACCTATATCATACAGTCGCCTTATCTGGACAAAACTCCGTGGATTAAAGCGGTGTCTGGAGTGTGACCAactaaaaagtgcaaaaaattgAGTGGAGGAAAGAGCGGATCTGGAATGGCCGGAGGAAGAAGAGGAGCGAATAGAACGACATATTGTCGCTCTCCTCTGAGCAACGATACAGGCTCCGTTGGCAATGGAAACCATTCCACTAGCTCACCTGTGACAGGTGTGAGGTCACGCACCAGAAATGGATCTGGAACGGGCATGTCCAGTCCACCGTTGGCCACTCAGACAGTCGTGCCACTGAAGCACTGCAAGATTCCAGAACTCTCCATGGACAAGAACGTCCTGTTTGAGCTCCACCTGTTTGCGTGCCATCTTATAGCTCTGTTTGTGCATTATGTCAACATCTACAAAACCGTGTGGTGGTACCCTCCCTCACACCCACCTTCACACACCTCTCTGAACTTTCACCTCATTGATTATAATATGCTGGTGTTCACCGTCATAGTGCTGGCACGCAGGCTAATTGCTGCCATTGTAAAAGAGGCATCACAAAGTGGGAAGTTGTCCTTCCCGCACTCTGTCTTCCTGGTGACGGCTCGTTTTGCCGTGCTGACTCTTGCAGGATGGAGTCTGTGTCGTTCACTTATTTATCTCTTCAAGACGTATTCTGTGCTCAGCCTGCTCTTCCTCTGCTATCCGTTTGGAATGTACATCCCGTTCTTCCGCCTCAGCTGTGATTTCCGCAGAGCTGGATCTATGTCTCCATTAAGTGGCATTGGTTCTAAAGATGTGGGTGCGGCTGCTTTGGGCCGAGGGGGGCGGGACTATTTGTCTGTCCTGAAGGAGACATGGAAACAGCACACCAGTCAGCTGTACAGTGCCCAGCCCATGCCCACCCACGCCTGCTGTCTCTCCCCTGACCTCATCCGCAAAGAGGTGGAGTACCTAAAGATGGACTTCAACTGGAGGATGAAGGAGGTTCTGGTTAGCTCCATGCTCAGTGCCTACTATGTTGCGTTCGTACCTGTTTGGTTTGTCAAGAGCACACAGTATGTAGATAAACGCTGGTCGTGTGAGCTGTTCATCCTGGTGTCCGTCAGTACTTCAGTCATTCTGATGCGGCACCTCCTACCTCCGCGATACTGTGACCTGCTTCATAAAGCTGCAGCTCATCTGGGCTGCTGGCAGAAAGTGGACCCGTCGCTGTGCTCAAACGTTCTCCAGCACATATGGACAGAAGAGTACATGTGGCCGCAGGGAGTTTTAGTCAAACacagtaaaaatgtttataaGGCCATGGGTCATTATAACGTGGCAGTTCCCTCAGATGTCTCACATTATCGCTTCTATTTTTTCTTCAACAAACCTCTTCGAATATTGAACATTCTCATAATCCTGGAAGGTGCAATGATATTTTACCAGCTTTATTCACTGATGTGTTCAGAGAAATGGCATCAAACGATATCATTAGCTCTAATATTATTCAGTAATTATTATGCCTTTTTCAAGCTGCTCAGAGACAGAATAGTTTTGGGGAAAGCGTATTCGTATTCAGCCAGTGCCTCTAATCAGAAAGTCAGTTAGAAAGGGATAAATTATTGTCAGTCATCACAGAAGAGCAGAAAACGTGCATGagagttgtttattttttctacaaGTGCATTTTTTGTCTGTTTATGTTCTGACTTGCCATGAAATAAAAaggaaacatattttttta

Function

symbol description
tmem39b Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM39B (transmembrane protein 39B).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6042 Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM39B (transmembrane protein 39B).

Ensembl:

ensembl_id ENSDARG00000018956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012058 True 1857 mRNA 0.46 9 33268657 33281310

Neighbor

gene id symbol gene type direction distance location
XLOC_006119 oip5 coding upstream 8858 33256847 ~ 33259799 (+)
XLOC_006118 ndufaf1 coding upstream 16900 33246150 ~ 33251757 (+)
XLOC_006117 si:ch211-10a23.2 coding upstream 145417 33117528 ~ 33123240 (+)
XLOC_006116 NA coding upstream 163429 33104911 ~ 33105228 (+)
XLOC_006115 rdh12 coding upstream 202827 33055548 ~ 33065830 (+)
XLOC_006121 ccdc28b coding downstream 785 33282095 ~ 33293654 (+)
XLOC_006122 iqcc coding downstream 17028 33298338 ~ 33301986 (+)
XLOC_006123 dcdc2b coding downstream 22877 33304187 ~ 33314758 (+)
XLOC_006124 brf1a coding downstream 86830 33368140 ~ 33449639 (+)
XLOC_006125 ftr80 coding downstream 170786 33452096 ~ 33458790 (+)
XLOC_006113 BX470227.1 non-coding upstream 283888 32984654 ~ 32984769 (+)
XLOC_006112 NA non-coding upstream 351731 32906643 ~ 32916926 (+)
XLOC_006111 CR936241.1 non-coding upstream 422048 32846493 ~ 32846609 (+)
XLOC_006105 CR769766.1 non-coding upstream 876158 32392383 ~ 32392499 (+)
XLOC_006133 CR524481.1 non-coding downstream 1144938 34426248 ~ 34426365 (+)
XLOC_006135 NA non-coding downstream 1470864 34752174 ~ 34984913 (+)
XLOC_006136 CR376850.1 non-coding downstream 1601936 34883246 ~ 34883370 (+)
XLOC_006137 CR376850.2 non-coding downstream 1688209 34969519 ~ 34969645 (+)
XLOC_006140 CU681845.1 non-coding downstream 2202308 35483618 ~ 35522176 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07388341_07401600 NA coding CI01000012 null 7388341 ~ 7401756 (-)
bowfin (Amia calva) AMCG00011030 tmem39b coding CM030133.1 CM030133.1 8133029 ~ 8149161 (-)