XLOC_006123 (dcdc2b)


Basic Information

Item Value
gene id XLOC_006123
gene name dcdc2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33304187 ~ 33314758 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012062
GCTGCCATGGCGACCAGGAAACATCGTGAACGGGAGggagtctctctctcacacacactgctttacTATAAGaaataaacactgaataaaaatcaGCACAACCGCAGATAACAGGCCAGATGAACTCACAGATTTTCTCCAGGTGATCAACTGAAAAGTCATGGCATCCACCGGTGTCACTAGTCACCTGCCTCCAGTCAAGAGTGTGATGGTCTATAGAAATGGAGACCCCTTCTTTTCAGGAAGGAGATTTGTGGTAAACCAGAGGCAGATCGCCACCATGGATGCATTACTTAATGACATCACTCTCAATATCGGAGCTCCGCTAGCCGTTCGAACTCTCTATACACCGCGATACGGCCACCGGGTCGCAGATCTTGGTGACCTACAGCAGGGGGCGCAGTATGTGGCTGCGGGGTCTGAACGCTTTAAGAAACTAGAtTATCTGAGCGCAGGACTGAAGAAAGCTGTTGAACCAACCCAGTCTAAAACACTTGCCAGGCCTAACGTGTCTGCGAAATGGAGAAAGGTCATCACTCTTCCTTGCATCATTCATGTGTTTAGAAACGGGGACATCCTCAGTCCTGCCATGCGTCTGATCATTCCTCGACACATGCTGAAAAATCTCGAGCAGATCCTGAGCCTCATTTCAGAAAAAGCCATGCTTCGTACTGGAGCTGTGCGCAGGATCTGTACTCTGGAGGGCTTCACGGTGACCTCCGCAGAGGAGCTGGAGACTGGGCAATGCTATGTTGCTGTGGGATCAGAAAGATTCAAGAAACTCCCATATGTGGAGATATTGCTGAATAAAGCAACAGGCAGCAGTGCCGACAGACATTATGCAGGAGACAGAGGATTGCACAGAAGAATTGAGGACACTCACAGTGACTCTACTCTCCTCAATTCTCCAgagAGGGAAGGAAGACGTGTGAAGTCCACTGGAGACGATGCGGAGCGGGAGAGTTCCCCTCAGCCAGTGAAGAGGAGAGGAAGAAGAGCAGAACGAGAGGGGGAGAACTCTGTTTTCTATGCCAGACCTGTGAGAGTCCGCAGGCAACAACCTGTACACAGACCAACACCTAAAGTCATAACAGAGCCCAGTGTGTTCAAGGCATCTGAGAGCACAATGAGGGAGGAAGTTCGAGGTGCTGAGGAGGTCACCGAGGATGAAAACACAGCTGTGGAGCTTCCTGTTGACCAGAGAGAAGCAGAAATTGTGGAGGATGAGGAGCTCCCTGAAAGAGAATTTGCTGCATCTGAGATACAGACATGGGATGACACGTCAGCTCCACAGAGAGAAACACCACAGGAACACACACCTCCGCATGAGACAAACAAATATGAGAGCGAGTCACACCATTCCagatcatcatcgtcatcatctcTCCGTCTTTCCCCACGACATGAAGAAACACAGCAGGAGCCTATTAGGAGATCCCATGatgaacaaacacacagagaTGCTGATTCACCTCGTCAGGCTGCTGAAGATGCACAAGATTGAGGCAATCCACACACATTCTCTGAACATGGACATGGCTGTCAAATGAACATCATATTGGTGAACAATGCCTTTCAAATAATGTACCCTGACCTCACAGCATGCAGACATCCACCGAGACGTATGCTTCTTATCATTTTTATTCCTTCCGTTTCAAAAAATATGACATCTGATTGTAAAAGACAATTCAAATAAAAGTATCCAACACAGA
>TCONS_00012063
ATGGCGACCAGGAAACATCGTGAACGGGAGggagtctctctctcacacacactgctttacTATAAGaaataaacactgaataaaaatcaGCACAACCGCAGATAACAGGCCAGATGAACTCACAGATTTTCTCCAGGTGATCAACTGAAAAGTGTGTGTTAATGTGATTAATTTAAGGTCATGGCATCCACCGGTGTCACTAGTCACCTGCCTCCAGTCAAGAGTGTGATGGTCTATAGAAATGGAGACCCCTTCTTTTCAGGAAGGAGATTTGTGGTAAACCAGAGGCAGATCGCCACCATGGATGCATTACTTAATGACATCACTCTCAATATCGGAGCTCCGCTAGCCGTTCGAACTCTCTATACACCGCGATACGGCCACCGGGTCGCAGATCTTGGTGACCTACAGCAGGGGGCGCAGTATGTGGCTGCGGGGTCTGAACGCTTTAAGAAACTAGAtTATCTGAGCGCAGGACTGAAGAAAGCTGTTGAACCAACCCAGTCTAAAACACTTGCCAGGCCTAACGTGTCTGCGAAATGGAGAAAGGTCATCACTCTTCCTTGCATCATTCATGTGTTTAGAAACGGGGACATCCTCAGTCCTGCCATGCGTCTGATCATTCCTCGACACATGCTGA

Function

symbol description
dcdc2b Acts upstream of or within pronephros development; sensory organ development; and sensory perception of sound. Predicted to be active in microtubule and microtubule organizing center. Is expressed in otic vesicle. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder; autosomal recessive nonsyndromic deafness 66; dyslexia; nephronophthisis 19; and sclerosing cholangitis. Orthologous to several human genes including DCDC2B (doublecortin domain containing 2B).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0048793 pronephros development biological_process
GO:0007605 sensory perception of sound biological_process
GO:0035675 neuromast hair cell development biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005874 microtubule cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-124 Acts upstream of or within pronephros development; sensory organ development; and sensory perception of sound. Predicted to be active in microtubule and microtubule organizing center. Is expressed in otic vesicle. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder; autosomal recessive nonsyndromic deafness 66; dyslexia; nephronophthisis 19; and sclerosing cholangitis. Orthologous to several human genes including DCDC2B (doublecortin domain containing 2B).

Ensembl:

ensembl_id ENSDARG00000053744

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012062 False 1712 mRNA 0.48 14 33304187 33314758
TCONS_00012063 True 640 mRNA 0.48 6 33304193 33308314

Neighbor

gene id symbol gene type direction distance location
XLOC_006122 iqcc coding upstream 2201 33298338 ~ 33301986 (+)
XLOC_006121 ccdc28b coding upstream 10533 33282095 ~ 33293654 (+)
XLOC_006120 tmem39b coding upstream 22877 33268657 ~ 33281310 (+)
XLOC_006119 oip5 coding upstream 44388 33256847 ~ 33259799 (+)
XLOC_006118 ndufaf1 coding upstream 52430 33246150 ~ 33251757 (+)
XLOC_006124 brf1a coding downstream 53382 33368140 ~ 33449639 (+)
XLOC_006125 ftr80 coding downstream 137338 33452096 ~ 33458790 (+)
XLOC_006126 ftr81 coding downstream 147474 33462232 ~ 33468697 (+)
XLOC_006127 jag2a coding downstream 173274 33488032 ~ 33551699 (+)
XLOC_006128 cfl1l coding downstream 291981 33606739 ~ 33609427 (+)
XLOC_006116 NA non-coding upstream 198959 33104911 ~ 33105228 (+)
XLOC_006113 BX470227.1 non-coding upstream 319418 32984654 ~ 32984769 (+)
XLOC_006112 NA non-coding upstream 387261 32906643 ~ 32916926 (+)
XLOC_006111 CR936241.1 non-coding upstream 457578 32846493 ~ 32846609 (+)
XLOC_006105 CR769766.1 non-coding upstream 911688 32392383 ~ 32392499 (+)
XLOC_006133 CR524481.1 non-coding downstream 1111490 34426248 ~ 34426365 (+)
XLOC_006135 NA non-coding downstream 1437416 34752174 ~ 34984913 (+)
XLOC_006136 CR376850.1 non-coding downstream 1568488 34883246 ~ 34883370 (+)
XLOC_006137 CR376850.2 non-coding downstream 1654761 34969519 ~ 34969645 (+)
XLOC_006140 CU681845.1 non-coding downstream 2168860 35483618 ~ 35522176 (+)

Expression


Co-expression Network