XLOC_006119 (oip5)


Basic Information

Item Value
gene id XLOC_006119
gene name oip5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33256847 ~ 33259799 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012057
AACAATAAACGAAGCGTCTTTTGAACTTGTGTGTGAGCTGTCCACAGCAACATCCACAGTAGAAACAAATCTCTATGCGATAATGGCGAACAGCACTCGGAGTTTACTCGAAAGCTCTTATGATATCGGTCCATGTGACTCGACACAGTCAAGTTCAATTGTAGAACAGCTTCAAGCGGTGAAGGATAAAGAAATCTGCATGGTAGACTTTAGGAATTGCATCGTTTTCCAATGCATAACATGCAACACTGTGCTTGGAGACTCTCTCGGCGTCTGCGGGGAAGTGGAGAGCAGCCAAAGTGTCATTTGTTTGAAAGTTACTGAGGATGTGATGGTGAATGAAAAGCACGAGATGTGTTCGAGCGGTCAGCTGGCTTCCTCCACCTACCAAACCCTTCTCTGCACTGGCTGTCATGATGCTGTTGGCTTGGTTCTTCATTCCACCCCGAAGCACCTGTCTGCTTTACGAAATCTCTTCCTTTTACGAAAAGAGCTGATAAACTGCTACATTCTAAGAAGCGGCACATGTGTTAAAGCCTCCAAAATCAACTTCAAACACAGACTCATGGACAAAAATATCAAAAAGCTGAAGGAGTACTTAGAAACTAAACTGAAGCAGGTAGACATTCTGGAGCAAATGATGGAAAAAATGTGCACACATGACGTGAACTAAAATTGCAGACTTGGaagatgtaaatatttttattggataacttttttgttaaaactttaaataaaattaatatttttgtattgta

Function

symbol description
oip5 Predicted to enable metal ion binding activity. Predicted to be involved in CENP-A containing nucleosome assembly and chromosome segregation. Predicted to act upstream of or within cell division. Predicted to be located in chromosome. Predicted to be active in chromatin; chromosome, centromeric region; and nucleus. Orthologous to human OIP5 (Opa interacting protein 5).

GO:

id name namespace
GO:0007059 chromosome segregation biological_process
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-090313-328 Predicted to enable metal ion binding activity. Predicted to be involved in CENP-A containing nucleosome assembly and chromosome segregation. Predicted to act upstream of or within cell division. Predicted to be located in chromosome. Predicted to be active in chromatin; chromosome, centromeric region; and nucleus. Orthologous to human OIP5 (Opa interacting protein 5).

Ensembl:

ensembl_id ENSDARG00000093597

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012057 True 758 mRNA 0.41 5 33256847 33259799

Neighbor

gene id symbol gene type direction distance location
XLOC_006118 ndufaf1 coding upstream 5090 33246150 ~ 33251757 (+)
XLOC_006117 si:ch211-10a23.2 coding upstream 133607 33117528 ~ 33123240 (+)
XLOC_006116 NA coding upstream 151619 33104911 ~ 33105228 (+)
XLOC_006115 rdh12 coding upstream 191017 33055548 ~ 33065830 (+)
XLOC_006114 arg2 coding upstream 222473 33024547 ~ 33034374 (+)
XLOC_006120 tmem39b coding downstream 8858 33268657 ~ 33281310 (+)
XLOC_006121 ccdc28b coding downstream 22296 33282095 ~ 33293654 (+)
XLOC_006122 iqcc coding downstream 38539 33298338 ~ 33301986 (+)
XLOC_006123 dcdc2b coding downstream 44388 33304187 ~ 33314758 (+)
XLOC_006124 brf1a coding downstream 108341 33368140 ~ 33449639 (+)
XLOC_006113 BX470227.1 non-coding upstream 272078 32984654 ~ 32984769 (+)
XLOC_006112 NA non-coding upstream 339921 32906643 ~ 32916926 (+)
XLOC_006111 CR936241.1 non-coding upstream 410238 32846493 ~ 32846609 (+)
XLOC_006105 CR769766.1 non-coding upstream 864348 32392383 ~ 32392499 (+)
XLOC_006133 CR524481.1 non-coding downstream 1166449 34426248 ~ 34426365 (+)
XLOC_006135 NA non-coding downstream 1492375 34752174 ~ 34984913 (+)
XLOC_006136 CR376850.1 non-coding downstream 1623447 34883246 ~ 34883370 (+)
XLOC_006137 CR376850.2 non-coding downstream 1709720 34969519 ~ 34969645 (+)
XLOC_006140 CU681845.1 non-coding downstream 2223819 35483618 ~ 35522176 (+)

Expression


Co-expression Network