XLOC_006115 (rdh12)


Basic Information

Item Value
gene id XLOC_006115
gene name rdh12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33055548 ~ 33065830 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012047
GTAGATGTGAGTGGGAGGCTGCTGAACACATTCGGACGGACAGAGACAGACTGGAGTACAGTACAgttacagcagcagcagcagtgtcaTGATGCTCGCGCTCGTGGCGTTCGCGGCGGGTTTAGGGCTCGTCGCGCTGATTTTAAGGCTGCTTTCTCCTCAGATCAGGAAATACGCCGCAGGAGGATCATGTCGATCCACAGTGCGGTTAGATGGAAAAGTTGCATTGGTCACAGGAGCAAACTCAGGAATTGGAAAAGAAACAGCTCTGGATTTGGCTTCTCGAGGAGCTCGAGTGATTCTAGCGTGTCGGGATTTGGAGAAAGCAGAGGAGGCGGCGGCGGAGATCCGCACAAGAGTGGGAGGAGCAAAAGTGGAGGTGCGAGAGCTAGACCTGGCGGACTGCTGCTCCATCAGAGCCTTCGCACAGAGATTCCTCAGAGaGGTGGATCACCTGCACATCCTCATCAACAATGCTGGTGTCATGATGTGTCCTTATATGAAAACTGCTgatggatttgagatgcagatcGGGGTCAATCATCTTGGTCACTACCTGCTGACGTATCTCCTCATTGGTCTGCTGAAGCGTAGCGCTCCTTCACGAATCGTGGTCGTTTCCTCCCTGGCACATAACTTCGGGTGGATTCGATTCCACGACCTGCACAGTCAGGGCAGCTACAACAGCGGACTTGCCTACTGCCAGAGCAAACTCGCTAACGTGCTTTTCACTCGTGAGCTGGCGCGCAGACTCCAGGGGTCGAATGTGACTGTGAACTCTGTGCATCCTGGAACGGTGAGGTCAGAGCTGGTGCGTCATTCTACGCTGATGTCCCTGCTGTTCGCTTTCTTCTCGATGTTCCTGAAATCCCCGAAAGAAGGCGCTCAGACCTCCATCTACTGCGCCGTCGCTGAGGAGCTCCAGTCAATCTCAGGCAAACATTTCAGTGACTGCGCTCCTGCTTTTGTGGCCCCTCAGGGACGGAGCGAGGAAACGGCGCGCAAACTGTGGGATGTAAGCTGTGAATTATTAGGCATCGAGTGGGACTGAAACGTTCATTTGACCTGCTTTATTTCTCCATGCTTAATTCTCAAACATTTTCAGCGATCATTTTTCATGTCTTTCGTTAGATATTTGTTTGGTTTTCGTTaggtatttgtttttgtattggcTTTCAGTTGCACAACCTACAATTTTCTTCTATAATGCCTTTGTGACAAGCACGTTTTGAGTTGGTTTTACTCTGGAACTCTCTGTAAGGCATTTTAAAACGTGTTTTATTGTGTTGGTATTTTGAACGCTGCTTTAATTCTCATCTCAGTATTCTCACATGAAGCTGCATATTGAAATCTTTTATACAGATGTGCTTTTGACTACTGTGGTACATTCATAATCAGAGacgaatatttaaatatatacag

Function

symbol description
rdh12 Is expressed in several structures, including brain; eye; gut; heart; and skeletal muscle cell. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 13 and Leber hereditary optic neuropathy. Orthologous to human RDH11 (retinol dehydrogenase 11) and RDH12 (retinol dehydrogenase 12).

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

ZFIN:

id description
ZDB-GENE-040718-9 Is expressed in several structures, including brain; eye; gut; heart; and skeletal muscle cell. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 13 and Leber hereditary optic neuropathy. Orthologous to human RDH11 (retinol dehydrogenase 11) and RDH12 (retinol dehydrogenase 12).

Ensembl:

ensembl_id ENSDARG00000018069

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012047 True 1422 mRNA 0.49 7 33055548 33065830

Neighbor

gene id symbol gene type direction distance location
XLOC_006114 arg2 coding upstream 21174 33024547 ~ 33034374 (+)
XLOC_006113 BX470227.1 coding upstream 70779 32984654 ~ 32984769 (+)
XLOC_006112 NA coding upstream 138622 32906643 ~ 32916926 (+)
XLOC_006111 CR936241.1 coding upstream 208939 32846493 ~ 32846609 (+)
XLOC_006110 slc66a3 coding upstream 242645 32807419 ~ 32812903 (+)
XLOC_006116 NA coding downstream 39081 33104911 ~ 33105228 (+)
XLOC_006117 si:ch211-10a23.2 coding downstream 51698 33117528 ~ 33123240 (+)
XLOC_006118 ndufaf1 coding downstream 180320 33246150 ~ 33251757 (+)
XLOC_006119 oip5 coding downstream 191017 33256847 ~ 33259799 (+)
XLOC_006120 tmem39b coding downstream 202827 33268657 ~ 33281310 (+)
XLOC_006105 CR769766.1 non-coding upstream 663049 32392383 ~ 32392499 (+)
XLOC_006103 NA non-coding upstream 947076 32105265 ~ 32108472 (+)
XLOC_006133 CR524481.1 non-coding downstream 1360418 34426248 ~ 34426365 (+)
XLOC_006135 NA non-coding downstream 1686344 34752174 ~ 34984913 (+)
XLOC_006136 CR376850.1 non-coding downstream 1817416 34883246 ~ 34883370 (+)
XLOC_006137 CR376850.2 non-coding downstream 1903689 34969519 ~ 34969645 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07537907_07544112 RDH11, RDH12 coding CI01000012 null 7537441 ~ 7544112 (-)