XLOC_006103


Basic Information

Item Value
gene id XLOC_006103
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32105265 ~ 32108472 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013408
atttaatttataattaaatgtaattttaatcattaaaaacgtaaatactggtctttgcttactgtttaagtcCCTATAGTAtatatgggatgtagaataagaaccatgcagagggacagcatcttcatacaggtggtgatgttgctgtctctttaagaatttggcttgttgagacgttatagtagtgtttgttactgaggcggtcggtcgagtatgctggctgtttacacagaacttcgcacgcttttcaaagaaaagtctattttggagtccacactttcaggtaagaatgtattaaagatatattttcagtctcatttttacatgtgaagccgtgttctgttgattttgtctgactctcggctttcccccgctttgtGCTCCGGGCTGGCTGGTGTAACGTTACGTTGGCCTGCatgatggagtttgctaagatgtctgcagcttattaaagaagttaatacaacgtgatatcgaagtcaccgagggacataacgttatagaaggacaagattgaacaacataatgcagcctaacagcattAGACCagtgaaggcatgtcatatgaaagcatggctcagttacaagatgtaagtatgtctcattatctataccatggttttaatggcttacatactattttaaatttgtaggtttttacttacaaacaacaataaatgtacacccacatgtttaaaattattttctaggttttcatcgaaagatgagagatcaactgaagaatgctatggacctgactttaaggtactctttctaaactttctccacttgattaatattattaaattctagctttggatggattcattcatatttgtttgtatgccacatcttatgttccaggaattgattttacagcagcacttctcatgttgccagccttgttaagcgagacacttcaacatttcgttgtgctccggatgacgcagtgggtagtgctgtcaccttacagcaagaaggtcgctggttcgagcctcggctggatcagttggcatttgtgtgaggagtttgcatattcttcaaGTGTTCGTGAAGGTtacctccaagtgctccggtttccccacaagtccaaagacatgcgctatagctgaatttgtgaaccatcttcaccacatccaacagttcaagtacaggaggaggccaccgactggacaactgtgttaacaagacgagtcacggcagtcttcagagttgatgggattgcgattggccgggctgatgatgtggacgaatatacatttttgacatatccatcttattagaaaatcaccttgatgtttctgcagtggaatgttttgaatgaacggtggacggtgacaagcctcaatctactccagttaccagagtgatcaaccttgttttttgtttctctacatgatCTTGGTATAATCacaatcaagttaatccagcacactgctatcattcatgcataaagcaaatttttaaataacttgtggtcctaatgactatcaaagaacattttccagatatgaatgctttacatgtcatgtttatcaaaagcataaacacatattgtgttacaacaaattacaactccacttgaggatgatgaggagtaatctactggtgttgaggaagaggctactgatgtatttggttttctgcactgttgaagcaatttatagagaaagtttgccttcattctgaaattcagagaaaattttgatgacaaattatttattatgactgagtattctgactaaaaacaaacactttggactttataaagtgaagtacttgatgtagcctgtgtaatgtgtttataaatcttaaacagtattcttgtggtctttgtattaagggtagattatatactgtacagtgagtgaacaatttttatttgttttctaaattgttctttttactgttttacatgtctgctttatatttactgtgtaattttatttcttgacacattcagttgtgagttgtaatgaaatatttctacattaataaataaaaatggacatctgcgaaccaaa

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1990399 epithelium regeneration biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013408 True 2024 lncRNA 0.37 4 32105265 32108472

Neighbor

gene id symbol gene type direction distance location
XLOC_006102 NA coding upstream 126781 31955220 ~ 31978484 (+)
XLOC_006101 NA coding upstream 254757 31806520 ~ 31850508 (+)
XLOC_006100 hif1aa coding upstream 321602 31757331 ~ 31783663 (+)
XLOC_006099 prkcha coding upstream 356295 31716820 ~ 31748970 (+)
XLOC_006098 slc38a6 coding upstream 397395 31687973 ~ 31707870 (+)
XLOC_006104 osr1 coding downstream 35898 32144370 ~ 32150443 (+)
XLOC_006105 CR769766.1 coding downstream 283911 32392383 ~ 32392499 (+)
XLOC_006106 nt5c1ba coding downstream 337697 32446169 ~ 32453932 (+)
XLOC_006107 rdh14a coding downstream 345790 32454262 ~ 32456842 (+)
XLOC_006108 mtres1 coding downstream 527725 32636197 ~ 32641537 (+)
XLOC_006074 NA non-coding upstream 1176604 30920554 ~ 30928661 (+)
XLOC_006071 CR762493.1 non-coding upstream 1268489 30836656 ~ 30836776 (+)
XLOC_006067 NA non-coding upstream 1427622 30676825 ~ 30677643 (+)
XLOC_006111 CR936241.1 non-coding downstream 738021 32846493 ~ 32846609 (+)
XLOC_006112 NA non-coding downstream 798171 32906643 ~ 32916926 (+)
XLOC_006113 BX470227.1 non-coding downstream 876182 32984654 ~ 32984769 (+)
XLOC_006116 NA non-coding downstream 996439 33104911 ~ 33105228 (+)

Expression


Co-expression Network