XLOC_006109 (sobpa)


Basic Information

Item Value
gene id XLOC_006109
gene name sobpa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32740509 ~ 32796029 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012041
ATGGCTGAGATGGAGAAAGAGGGAAGACCTCCGGAAAGCAAGAGGAGCAGAAAGCCAGCTCACCCTGTGAAGAGGGAAATTAACGCAGAGATGAAGGTCCCGTCCAATCGGCCCCTCCCAGGGGCGGGGCAGGCAGGCAATCTCCATGGCAACTCGCCCTACTTGATGAGTTTTGCTGAAAACACCATGAATGAGTTACTTGGATGGTACGGATACGATAAAGTGGAGTTACGAGATTCGGACGACATAGAGATCCGCAACTATCCTGACGGAGAAATGCGGCAACACATCTCTGTCCTGAAAGAGAACTCTTTGCCAAAAGCATCCACATTGGAGAACAGCAGTGGTTCTCCTCCACACGCCAACAGCTCTGGCTCTACTCCCACATCACGCAATGGAGTGACAGCCGAGTCGTCTGTAAACCCCTCCTCCTCAAAGGAGCACGGAGGCCTGCCAATCATAGTGCCCTTAATCCCGCCCCCTCTCATAAAAGCACCAGCAGaGGAGGACTCGTCTAATGTTCAGATCATGTGTGCGTGGTGTCAGAAGGTGGGAGTGAAGCGTTATTCTCTCAGTATGGGCTCTGAGCTCAAGAGCTTCTGTAGTGAGAAATGCTTCGCTGCCTGTCGACGTGCCTACTTCAAACGCAACAAGCTTGGATATGTGAGGAATTGCAGTGCCAGAGAGGAGGAGGGTGTTCCGACCCACAGCTTGTCCAAAGACACGCCCAGACTTGTGCTCAAGACAAACAGCGATGTGCTTGTCTGTGATTGGTGCAAACACATCCGCCACACTAAGGAATACCTGGATTTTGGAGCTGGTGAGAGGAGGCTTCAGTTTTGCAGTGCTAAGTGTCTGAACCAATATAAGATGGACATATTCTATAAAGAGACTCAGGCTGCTCTGCCAGGGGGTTTGTGTAACCCTCCTCTCCCCACCAGTGATACAAAATCAGAGAGCGGTGCGGGTGTACAGCTCCTTACACCTGAGTCCTGGAGTGCACCTCTGAGTGAGCTCCGCAGTCGAAAGGCACCTTCACCAGTGGGTGCCACTATAGCTGGACCTTCTGGATCCACGTCAGGGTCACCATCTGAAGCTGGAACTGTGTGTTCCTCATCgtcctcatcatcttcatcatcatcatcaacgaAAATACCCACACCGCGGCCACACGAAAGCCCTTCTTTACCGCCACCTCATCCACCATCTATATCAGGGCTACATCCAGCTCTGGGTATGCCACCCGGCAGCCCACCTATGGTCATGACACCTCGAGGCCCAGTTCCTTTCCCTATCTTCATGGAGCACCAGATGATGCAGCAGATGCGCCCTCCGTTTCTACGCCCACCAGGCCCAAACAGCCCTCATTCCAATCCCATGATTCCTGGCATTGGGCCACCACCACCTCCACGGACTTTGTGTCCTCCATCAAGCCCCATGCATCGCCCACTCCTTTCCCCCCATTTACACCCTTCCTCTACCCCAACCCTTTCTGGGAACCCTCCAGGTATAATGCCCCCTCACCCTGCTGCCCACATGCCAGGCTTGCCTTTCCCCCCAGTTAACATGATGCCATCTGGTCCCATCCCAGTTCCACCTATTATGAATATTGGCATGCCTTCTCTGGCCCCCTTAGTGCCTCCACCAACGTTATTAGTGCCCTATCCAGTGATTGTGCCATTGCCAGTCCCCATACCCATACCAGTGCCCATACCATTTAATCCGCAGCGGTCAGGTGACAGACCAGGAAATGATGGAACACTTCCAAACACTGCAAACGAGCAGAAAGATTCAAAAGCACCACCATCATTTTCCTCTAGAGGAGAGGAGAGGGACTTTCAGAAAGCCCCTCCTAACTCAGACACACTTTCACCAGAATTTTCCAAGCAGACGGAGCAGGGTAGGACAAACATGGCAGATTTGATGGTTAAAATGGAAAACTCTGGTAAAGGAAGTTCTGAACACTCACATAAAGACACACCAGCAGATGGAGTCATTGATCTTACGACCAGTCATCGCTCCCGGCAACAGCTAGTGATCCAGAGGGCTGTAACCTGTGTGCAGGTAAAAGCAGAGCCCGGGTTAAGTCCACCGCCTGCACTTTTGGGTGAAACTGAGTTGGATGGGTCAACAAGTATTAGCACAGGAACAGCAAAAGATGACCACAGAGACACATACAGTAATGCTGAAAGCCCATTGGCTAGTGTAGCTCTGCCTTGTGCTGACCCATCCTACTGCAGCGGCACACCACCACtttctcagccaatcacatgcagTGCCTCCATTATCCCTAGCAACATCACCACCGCTAAGACTGAGCCTGGCTCTGCTACACCCTGCAATGTGATCGTTAATGGGAGCTGTAATTTGCCTCCAACAGAGAGTTTGATCAGAACGCCTCCGTTAGAGCAACGCCCTCAGGTGGACACCTGCCGCAGGACGGCCACTGTGTGCGATGAGCCTGCGGGGGCAGATCTAGAAGGAGAGGACCTGAAAGAGAACAGTTGCCTAGCCACAGAAAAAGACTCGGCAGGTAAGAGATGTTCAAATGACCAGTCTGCTATTACTACAGGCACAGGGGATGATAAATCTCAGAGCCCTGAAGATGACCCATCTGGTGAGGACCATGCCTACGCCTTGCCCCTCATGCCCAAACCTGGCTGTGTCATTCAACCAGTGCCCAAACCTGCTGAAAAAACTGCTGCCATCTTGCCCTGTGGCTTGACAGCCCCATTAACAGGAACTGTTCCAATGGAAATGGAGCCTCCACTGAAGAGAAGGTGTCTGCGTATCCGCAATCAGAACAAGTGA
>TCONS_00012042
ATGGCTGAGATGGAGAAAGAGGGAAGACCTCCGGAAAGCAAGAGGAGCAGAAAGCCAGCTCACCCTGTGAAGAGGGAAATTAACGCAGAGATGAAGGTCCCGTCCAATCGGCCCCTCCCAGGGGCGGGGCAGGCAGGCAATCTCCATGGCAACTCGCCCTACTTGATGAGTTTTGCTGAAAACACCATGAATGAGTTACTTGGATGGTACGGATACGATAAAGTGGAGTTACGAGATTCGGACGACATAGAGATCCGCAACTATCCTGACGGAGAAATGCGGCAACACATCTCTGTCCTGAAAGAGAACTCTTTGCCAAAAGCATCCACATTGGAGAACAGCAGTGGTTCTCCTCCACACGCCAACAGCTCTGGCTCTACTCCCACATCACGCAATGGAGTGACAGCCGAGTCGTCTGTAAACCCCTCCTCCTCAAAGGAGCACGGAGGCCTGCCAATCATAGTGCCCTTAATCCCGCCCCCTCTCATAAAAGCACCAGCAGaGGAGGACTCGTCTAATGTTCAGATCATGTGTGCGTGGTGTCAGAAGGTGGGAGTGAAGCGTTATTCTCTCAGTATGGGCTCTGAGCTCAAGAGCTTCTGTAGTGAGAAATGCTTCGCTGCCTGTCGACGTGCCTACTTCAAACGCAACAAGGTCTGTGATTGGTGCAAACACATCCGCCACACTAAGGAATACCTGGATTTTGGAGCTGGTGAGAGGAGGCTTCAGTTTTGCAGTGCTAAGTGTCTGAACCAATATAAGATGGACATATTCTATAAAGAGACTCAGGCTGCTCTGCCAGGGGGTTTGTGTAACCCTCCTCTCCCCACCAGTGATACAAAATCAGAGAGCGGTGCGGGTGTACAGCTCCTTACACCTGAGTCCTGGAGTGCACCTCTGAGTGAGCTCCGCAGTCGAAAGGCACCTTCACCAGTGGGTGCCACTATAGCTGGACCTTCTGGATCCACGTCAGGGTCACCATCTGAAGCTGGAACTGTGTGTTCCTCATCgtcctcatcatcttcatcatcatcatcaacgaAAATACCCACACCGCGGCCACACGAAAGCCCTTCTTTACCGCCACCTCATCCACCATCTATATCAGGGCTACATCCAGCTCTGGGTATGCCACCCGGCAGCCCACCTATGGTCATGACACCTCGAGGCCCAGTTCCTTTCCCTATCTTCATGGAGCACCAGATGATGCAGCAGATGCGCCCTCCGTTTCTACGCCCACCAGGCCCAAACAGCCCTCATTCCAATCCCATGATTCCTGGCATTGGGCCACCACCACCTCCACGGACTTTGTGTCCTCCATCAAGCCCCATGCATCGCCCACTCCTTTCCCCCCATTTACACCCTTCCTCTACCCCAACCCTTTCTGGGAACCCTCCAGGTATAATGCCCCCTCACCCTGCTGCCCACATGCCAGGCTTGCCTTTCCCCCCAGTTAACATGATGCCATCTGGTCCCATCCCAGTTCCACCTATTATGAATATTGGCATGCCTTCTCTGGCCCCCTTAGTGCCTCCACCAACGTTATTAGTGCCCTATCCAGTGATTGTGCCATTGCCAGTCCCCATACCCATACCAGTGCCCATACCATTTAATCCGCAGCGGTCAGGTGACAGACCAGGAAATGATGGAACACTTCCAAACACTGCAAACGAGCAGAAAGATTCAAAAGCACCACCATCATTTTCCTCTAGAGGAGAGGAGAGGGACTTTCAGAAAGCCCCTCCTAACTCAGACACACTTTCACCAGAATTTTCCAAGCAGACGGAGCAGGGTAGGACAAACATGGCAGATTTGATGGTTAAAATGGAAAACTCTGGTAAAGGAAGTTCTGAACACTCACATAAAGACACACCAGCAGATGGAGTCATTGATCTTACGACCAGTCATCGCTCCCGGCAACAGCTAGTGATCCAGAGGGCTGTAACCTGTGTGCAGGTAAAAGCAGAGCCCGGGTTAAGTCCACCGCCTGCACTTTTGGGTGAAACTGAGTTGGATGGGTCAACAAGTATTAGCACAGGAACAGCAAAAGATGACCACAGAGACACATACAGTAATGCTGAAAGCCCATTGGCTAGTGTAGCTCTGCCTTGTGCTGACCCATCCTACTGCAGCGGCACACCACCACtttctcagccaatcacatgcagTGCCTCCATTATCCCTAGCAACATCACCACCGCTAAGACTGAGCCTGGCTCTGCTACACCCTGCAATGTGATCGTTAATGGGAGCTGTAATTTGCCTCCAACAGAGAGTTTGATCAGAACGCCTCCGTTAGAGCAACGCCCTCAGGTGGACACCTGCCGCAGGACGGCCACTGTGTGCGATGAGCCTGCGGGGGCAGATCTAGAAGGAGAGGACCTGAAAGAGAACAGTTGCCTAGCCACAGAAAAAGACTCGGCAGGTAAGAGATGTTCAAATGACCAGTCTGCTATTACTACAGGCACAGGGGATGATAAATCTCAGAGCCCTGAAGATGACCCATCTGGTGAGGACCATGCCTACGCCTTGCCCCTCATGCCCAAACCTGGCTGTGTCATTCAACCAGTGCCCAAACCTGCTGAAAAAACTGCTGCCATCTTGCCCTGTGGCTTGACAGCCCCATTAACAGGAACTGTTCCAATGGAAATGGAGCCTCCACTGAAGAGAAGGTGTCTGCGTATCCGCAATCAGAACAAGTGAAATTGAGGAAAG

Function

symbol description
sobpa Predicted to enable metal ion binding activity. Orthologous to human SOBP (sine oculis binding protein homolog).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-313 Predicted to enable metal ion binding activity. Orthologous to human SOBP (sine oculis binding protein homolog).

Ensembl:

ensembl_id ENSDARG00000054253

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012041 False 2811 mRNA 0.52 8 32740509 32796017
TCONS_00012042 True 2715 mRNA 0.52 6 32740509 32796029

Neighbor

gene id symbol gene type direction distance location
XLOC_006108 mtres1 coding upstream 98972 32636197 ~ 32641537 (+)
XLOC_006107 rdh14a coding upstream 283667 32454262 ~ 32456842 (+)
XLOC_006106 nt5c1ba coding upstream 286577 32446169 ~ 32453932 (+)
XLOC_006105 CR769766.1 coding upstream 348010 32392383 ~ 32392499 (+)
XLOC_006104 osr1 coding upstream 590066 32144370 ~ 32150443 (+)
XLOC_006110 slc66a3 coding downstream 11390 32807419 ~ 32812903 (+)
XLOC_006111 CR936241.1 coding downstream 50464 32846493 ~ 32846609 (+)
XLOC_006112 NA coding downstream 110614 32906643 ~ 32916926 (+)
XLOC_006113 BX470227.1 coding downstream 188625 32984654 ~ 32984769 (+)
XLOC_006114 arg2 coding downstream 228518 33024547 ~ 33034374 (+)
XLOC_006103 NA non-coding upstream 632037 32105265 ~ 32108472 (+)
XLOC_006102 NA non-coding upstream 762025 31955220 ~ 31978484 (+)
XLOC_006101 NA non-coding upstream 890001 31806520 ~ 31850508 (+)
XLOC_006074 NA non-coding upstream 1811848 30920554 ~ 30928661 (+)
XLOC_006116 NA non-coding downstream 308882 33104911 ~ 33105228 (+)
XLOC_006133 CR524481.1 non-coding downstream 1630219 34426248 ~ 34426365 (+)

Expression


Co-expression Network