XLOC_006087 (gdf10a)


Basic Information

Item Value
gene id XLOC_006087
gene name gdf10a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31285660 ~ 31289625 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012009
AGAAGAAATAAGTGATGTGTCACAGGTTTTACACGAGGAGACAGGCATAAACTAAAACTGAAGCGCCGCGACCACTTCCTCTCTGAACAGCTTTACAAGGCGAGAAAGGCAGCAACTCTCCAAACCGTATCACTGGAAAACGTCTCTCCGAGACTTACTGTCATAGTGAAAACTTTTCGCATGTTTTAATATGTGCAAGAGCGACATTTAACTCCACGGCTATCAATCGTTTGGaaagtttttgcttttttgtgcaacatgacatttaaatgtgtctttttgACGCACCTGTTATTGCTTTGGGTTGGTTCCGAAACTGGCGCATCTGAAGCTGCTGGGACAAGCGCGCGCGACAGCACGACAGACGCGCTCGTGCCCACTGATGCGCTCTCGCAGCATATGTACAAACTCTATGAGAAGTACAACACTGAACCTAACCGGCTCAAAGAGGGGAATACTGTAAGAAGCTTTAAAGCAAAACCTGAGAATGTGGAGCAGAGGGTCTCATACCGGCTGAATCTCACTTCCCTTCAGGGATCTGAGGTGATTCTCTCATCAACATTTCACTTCTTTTTTGACAAACGGCCCCGCCAGAGGTCCTGGTTCTGCAAGCGCTTCAAGAACCCCTCCTGTCGCATCACAAATTTCCCTCTACTTCCCTCTATCCGTCTTCTTTTCCGGTCTCCCTCCGTCAACTCAACCACAGGATCACTGCTTGGAAACCTCACTGTAGTTCCTCACAGACGTGGGACCTGGCAGAGCAAGGATGTGTCTGTCATTATGAAGGAGGCCCGAGATAGGAATCAGCTTTTGATCACTTTGGAGTTTGACTATGGAGAGCAGTATCAAAGGTATCAGGACCAGCTCTCACCCTCCACTCTTCCATACTTACTGGTATATGCTAATGACCTGGCCATTTCAGAGCCCAACAGTGTGGCTGTGAGCCTGCAGAGATACGACCCTTTCATCGGAGACCAGCAGCCAGCTCAGTCTCCAGACTCCTCACCTGACATACGCGTGAAGCGGGAGCTGGAACTGGACTTCACTGATCCCATTGAGAACAATGAGCTCCCGGAGGTGGAGTACAACAGCTTCAAACAGCATGATATGTGGGAAAGCGCTTACTATCCGCTCAAGCCAAAGCCCTTCAAAAAAGAACGTCGGAGGAAAGGCCAGGAGCACACTGATGGATTCGGCAAGTCTCAGGTTCTCCGGTTTGATGAGAAAACCATGAAGAAGGCTCGGAGGAGACAGTGGAAAGAACCTCGCAGCTGTTCCAGGAGGTACCTGAAGGTGGACTTTGCAGATATTGGGTGGAACGAGTGGATTTTGTCTCCCAAGTCTTTCGATGCTTTCTACTGCGCAGGAACGTGTGAATTCCCCATTCCAAAGGTGGTCCGCCCGTCCAACCATGCAACCATCCAGAGCATAGTCAAGGCTGTTGGGATCATTCCAGGTATCCCAGAGCCATGCTGTGTCCCAGAGAAGATGAAACCTCTCAGTGTATTATTTGTGGATGAGAGCAAAAACATTGTATTGAAGATCTACCCCAACATGTCTGTGGAGACATGCGCATGTAGATAGACTCGCTGGCAGAGGAAGGAAAAACAAATGGGCATTGTTTTGGTTTTGACACCCAAATTTACCTTGAAGAGGCATATTGTCTTTAGTTGCACTTGGTGGGAAGTGCACACGTTTGTATGGACTGCATTTCATCTCTTATTTTATACAGTATCTGTGATATTTCATTACTTCTGTTCTAAACCTTTTTAATTGTGCTAGATGAGTAACACGAGCACTTACTCTTACACTTATTTGCTTTTAAATTGTGAGATATGAATGGCTTAGATTACTGGATGTACAATAAGGTTTTATAGGTTACTGAATTTAAGCCTTATCTTCTGGCAGAATTGTTGAATTATGTTGGAAAGTAAATTAGAAAACTATTCTATTATTCAGATTAATGTTGGTGTAGTAACAGATTAAGATAAAGTCTTTgtgtgtattaaaaatgtaagtgTAACTTGATATTTGGGTCATTTAAAATCATAAATGATCAAGTACA
>TCONS_00012010
GAAGTACAACACTGAACCTAACCGGCTCAAAGAGGGGAATACTGTAAGAAGCTTTAAAGCAAAACCTGGTGGTCCGCCCGTCCAACCATGCAACCATCCAGAGCATAGTCAAGGCTGTTGGGATCATTCCAGGTATCCCAGAGCCATGCTGTGTCCCAGAGAAGATGAAACCTCTCAGTGTATTATTTGTGGATGAGAGCAAAAACATTGTATTGAAGATCTACCCCAACATGTCTGTGGAGACATGCGCATGTAGATAGACTCGCTGGCAGAGGAAGGAAAAACAAATGGGCATTGTTTTGGTTTTGACACCCAAATTTACCTTGAAGAGGCATATTGTCTTTAGTTGCACTTGGTGGGAAGTGCACACGTTTGTATGGACTGCATTTCATCTCTTATTTTATACAGTATCTGTGATATTTCATTACTTCTGTTCTAAACCTTTTTAATTGTGCTAGATGAGTAACACGAGCACTTACTCTTACACTTATTTGCTTTTAAATTGTGAGATATGAATGGCTTAGATTACTGGATGTAC

Function

symbol description
gdf10a Predicted to enable cytokine activity. Predicted to be involved in SMAD protein signal transduction and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including Bergmann glial cell; hypophysis; musculature system; otic vesicle; and sensory system. Orthologous to human GDF10 (growth differentiation factor 10).

GO:

id name namespace
GO:0060395 SMAD protein signal transduction biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-17 Predicted to enable cytokine activity. Predicted to be involved in SMAD protein signal transduction and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including Bergmann glial cell; hypophysis; musculature system; otic vesicle; and sensory system. Orthologous to human GDF10 (growth differentiation factor 10).

Ensembl:

ensembl_id ENSDARG00000095378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012009 False 2065 mRNA 0.45 3 31285660 31289625
TCONS_00012010 True 538 mRNA 0.41 2 31286076 31289422

Neighbor

gene id symbol gene type direction distance location
XLOC_006086 ptpn20 coding upstream 57108 31205439 ~ 31228552 (+)
XLOC_006085 ptpn20 coding upstream 89069 31192503 ~ 31196591 (+)
XLOC_006084 ptpn20 coding upstream 99877 31184796 ~ 31185783 (+)
XLOC_006083 ptpn20 coding upstream 103116 31182103 ~ 31182544 (+)
XLOC_006082 ptpn20 coding upstream 104650 31180084 ~ 31181010 (+)
XLOC_006088 antxr1d coding downstream 7391 31297016 ~ 31335750 (+)
XLOC_006089 METTL18 coding downstream 100688 31390313 ~ 31392869 (+)
XLOC_006090 tdrd9 coding downstream 112442 31402067 ~ 31423346 (+)
XLOC_006091 lrrc9 coding downstream 183565 31473190 ~ 31479801 (+)
XLOC_006092 lrrc9 coding downstream 190189 31479814 ~ 31494287 (+)
XLOC_006074 NA non-coding upstream 356999 30920554 ~ 30928661 (+)
XLOC_006071 CR762493.1 non-coding upstream 448884 30836656 ~ 30836776 (+)
XLOC_006067 NA non-coding upstream 608017 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 773937 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 1033803 30251741 ~ 30251857 (+)
XLOC_006101 NA non-coding downstream 516895 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 665595 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 815640 32105265 ~ 32108472 (+)
XLOC_006105 CR769766.1 non-coding downstream 1102758 32392383 ~ 32392499 (+)
XLOC_006111 CR936241.1 non-coding downstream 1556868 32846493 ~ 32846609 (+)

Expression


Co-expression Network